Lcla018012.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01014477.1:6321-8485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0072 0.75 10.9 4.5 3 23 204 224 203 224 0.92 2 10 0.00017 0.018 16.0 0.4 2 23 238 259 237 259 0.96 3 10 1.9 1.9e+02 3.3 3.7 1 23 285 307 285 307 0.90 4 10 4.2e-05 0.0044 17.9 1.7 1 23 313 335 313 335 0.96 5 10 0.0034 0.35 11.9 5.4 1 20 340 359 340 362 0.95 6 10 1.2e-05 0.0013 19.6 3.2 2 23 368 389 368 389 0.98 7 10 4.4e-06 0.00046 21.0 0.9 1 23 395 417 395 417 0.97 8 10 0.00084 0.086 13.9 2.0 1 23 423 445 423 445 0.96 9 10 1.4e-05 0.0015 19.4 2.5 1 23 451 473 451 473 0.99 10 10 1.1e-05 0.0011 19.8 0.4 1 23 479 501 479 501 0.97
Sequence Information
- Coding Sequence
- ATGAATAAAATGCaagacaatttattaaataagaaatttaataatatttgtagaatttgtttaaaagaatGTGGTAACATGTTGcctatttttaaacaaaacggTGTAAAATTAGAGGATTATTTATCTTTAGCAGATAAAATATCGTCTATCGCGAAAGTTAAGataAACAAGGAAGATGGATTGCCACAATTAATTTGTCATCCATGtaatttgttaattgaaaaattttatgaatttcgaGCTCAAGTGGAAATTTCAGATCGTGCTTTACGATCTGCTTTAAGCACAGAAAGAATTAGTTGTAAATCAGAAATCAGTGAATATTACGAGGTATTTACTAGTGAGAATATTTCTGATGCTCATTTAAATTTAGGTGAAGTTAATACGATAATGGTTCCTGAGGAAGATGACATGGAAGTGgtGTGGAAAATTTGTAATGTAAATAAAGAAGAACCTGAAAATATTGGTTACGATGAATCAATTCTCAATGATTTTCAAGCTTACGATAATGAAAGTGAACAGGAATTCGATGGACTTTTAATGGCaccagaaaaatattcatctgGTATTATTGAGAACAAAACAAAAGTACAACGTCTAAATAATTGTACACAATGTAACAAATGTTTTCATGATAGTAAAGAATTGGAAATTCATTCACTCGATCATGTGAGAAATagtgaagaaaataatatgaatgATGAAACAAAATGTGAATTGTGCTTTGAACAATTTTCATcgttagaaaatttaaaaattcacatacAAGATCATTTTTGTGACACGCAAACAACAAATTCCGAGAATAATACTAAATCTGGGAAAATGGACCATCAAAGCAATGAGGAGTATCATTGTTCGcaatgtaaaaaagaatttctcacCGCGGACGAATGTTCCGAGCATATCAAGGAGcacaatatacaaaatttatttatgtgtGGAATATGCAGTAAAGTATTTAAGAGAAATTCATCCCGGAAAAGGCATGAATTGAATCatgttgagaaaaattttaaatgccgACAATGTGGAAAGACATTTCAGAAGAAAACGGAGTTgagGTATCATGTGAGTTGTCACGTGGTTATTACGCCCACGTGTGATATTTGTAAGAAAACATTTCAAAATCGACAATCATTGAAACTTCACATGAAACGGCACACTGGTGAAAATACATTTGCATGTAAAACAtgtgggaaaaattatttttccaattcagAATTAAATCGGCATGTACAAATACATTTGGGAAAAAGAGATTTCCCATGTTTATTTTGCAATCAatcgtttttttcaaaacccgAACTCACAAGGCACAGCAAATATCATCGTGgtgataagaaatttaaatgtcaaatttgtTCGAAATCGTATTTTGAATCTGGACATTTGAAAGTACATCTCAGAATACATACCGGAGAGAAACCATTTATCTGTGAAATTTGTGCCAAAGCttttatatcaaaatcaaaactcGTTAggcataaaaaaattcacttgaaatcaaattcaaagaaaagtaattaa
- Protein Sequence
- MNKMQDNLLNKKFNNICRICLKECGNMLPIFKQNGVKLEDYLSLADKISSIAKVKINKEDGLPQLICHPCNLLIEKFYEFRAQVEISDRALRSALSTERISCKSEISEYYEVFTSENISDAHLNLGEVNTIMVPEEDDMEVVWKICNVNKEEPENIGYDESILNDFQAYDNESEQEFDGLLMAPEKYSSGIIENKTKVQRLNNCTQCNKCFHDSKELEIHSLDHVRNSEENNMNDETKCELCFEQFSSLENLKIHIQDHFCDTQTTNSENNTKSGKMDHQSNEEYHCSQCKKEFLTADECSEHIKEHNIQNLFMCGICSKVFKRNSSRKRHELNHVEKNFKCRQCGKTFQKKTELRYHVSCHVVITPTCDICKKTFQNRQSLKLHMKRHTGENTFACKTCGKNYFSNSELNRHVQIHLGKRDFPCLFCNQSFFSKPELTRHSKYHRGDKKFKCQICSKSYFESGHLKVHLRIHTGEKPFICEICAKAFISKSKLVRHKKIHLKSNSKKSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881502;
- 90% Identity
- -
- 80% Identity
- -