Basic Information

Insect: Leptopilina clavipes
Gene Symbol: -
Assembly: GCA_001855655.1
Location: JUFY01023745.1:103318-107207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00014 0.015 16.3 1.7 3 23 163 183 163 183 0.99

2 12 0.00075 0.078 14.0 3.2 1 23 654 676 654 676 0.98

3 12 0.00068 0.07 14.1 0.2 1 23 682 704 682 704 0.96

4 12 0.4 41 5.4 0.1 2 23 723 744 722 744 0.93

5 12 0.00046 0.048 14.7 1.0 1 23 750 772 750 772 0.98

6 12 0.00028 0.029 15.4 2.2 1 23 778 800 778 800 0.98

7 12 6.2e-07 6.4e-05 23.7 2.5 1 23 806 828 806 828 0.97

8 12 1.3e-05 0.0014 19.5 0.3 1 23 834 856 834 856 0.98

9 12 6.4e-05 0.0066 17.4 2.2 1 23 936 958 936 958 0.97

10 12 0.0028 0.29 12.2 1.2 1 23 964 986 964 986 0.97

11 12 7.4e-06 0.00076 20.3 3.3 1 23 998 1020 998 1020 0.98

12 12 1 1e+02 4.2 8.5 1 23 1030 1053 1030 1053 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00014	0.015	16.3	1.7	3	23	163	183	163	183	0.99
2	12	0.00075	0.078	14.0	3.2	1	23	654	676	654	676	0.98
3	12	0.00068	0.07	14.1	0.2	1	23	682	704	682	704	0.96
4	12	0.4	41	5.4	0.1	2	23	723	744	722	744	0.93
5	12	0.00046	0.048	14.7	1.0	1	23	750	772	750	772	0.98
6	12	0.00028	0.029	15.4	2.2	1	23	778	800	778	800	0.98
7	12	6.2e-07	6.4e-05	23.7	2.5	1	23	806	828	806	828	0.97
8	12	1.3e-05	0.0014	19.5	0.3	1	23	834	856	834	856	0.98
9	12	6.4e-05	0.0066	17.4	2.2	1	23	936	958	936	958	0.97
10	12	0.0028	0.29	12.2	1.2	1	23	964	986	964	986	0.97
11	12	7.4e-06	0.00076	20.3	3.3	1	23	998	1020	998	1020	0.98
12	12	1	1e+02	4.2	8.5	1	23	1030	1053	1030	1053	0.97

Sequence Information

Coding Sequence: atgtttaaaagctGCCAAGTGATTTTAACGGACATAAATAATGTTCTGAAATTAAAGAAGctccaaaataacaaagaagaaaattccTCGACTGACAAGTCCATCAAGACTCATCAAGCTTATaaggaaaatttacaattaaacgAAAACGAAAGtagttttatcaataattcaaataataatagcaaAGGATGCACTAAAATTGAAGCAGGACCTTCAAAAGTTCCTGCagtaaacattgaaaaatttcacgaaaagcctgaaaatttgaaaattcccatattaaatattgaaagacTATCGGAAAAAACGGAAATAAAATCATTAGAAATTCCCCTAGTGAGCATTGAAAGACTATGTGATGGAAACGAAGcaaataatcgaaaaattcCTTCAGTAAATGCTGAATTATCCGAAACAAGAATTTGGAATAAGGGAACGAAAGCTTTAAAAATCCCtattatagaaattgaaaaactccATTGGTGCACGCAAtgtcaaagaaattttaaatccaatcGAGCTTTACAAGATCACATAAACACACACAATGAGGAACAAAATTGTAATGAACGGAAACAGTTTTTTGCTTGTTCAGTcggtgaaaatgattttttcgaGTCAAAGGAAAATgcaagaaatagaaaatctcAAGTTTTACGTCCGCACAACAAAGaagataaagaagaagaagaagaaaaaaatgtggaaaTTAAGGCCACGGAGAATACAACATCCGTTCCCGAAGAAGATTTTTTCGAATTCGTGCAGTGTCAGCGAAACCTCACCTCtcaaaatgaagaagaaaaagaagatatagaaataaatgtagtAGGAACTTCGGACcaagatgaaaatattttagaatccTCACAAATTCAAAGCCAAAGATTTGATTTCAACGACTCCTCATATTCTCCCAGTgaaattgatgttttaaacGAACTAAATGAAATTCTAACTAGTcgagaagaaatttttcccaaatcttcccgaaattggaaaaatatttggaaagatcctttattatatgaaaatggagatattgaagaaatagaaattatgaAGAGTTCACgggaaaaaagttttccaaTTTCCCCGCAAAATCGGCgaagtattttaaatgatCATTCACACTCTCAGAAGGAAAATCCAGATGTTGACTATatggaaaatacaaaaaggcCAAAGGAGAAAGATTTTTCCAAGTCGCCAAGAAAtgggagaaataattttacagattCTTCTCAATCTGTGATTGAAAATGAAGATTTTAAAGAGACAGAAATGTGTAAAAGTCAAGAAGGGAAAAATcggagaaataattttatagatcCTTTACAATCTctgattaaaaaagaagataatagGGAAACAGAAAGTACAAAAAGTCCACAAGAGAAAACTATTTTACAAtcacgaaatatttttatagaccCTTTAAAATCTCTGATTGAAACTGAAGATATTGAGAAAACCAAAATTAGGAAAAGTCCACGagtgacaaatattttaaattctctacGAACTCGTTTGAAAGATCAACTAATCTCTCTCagtgaaaatgaagaagaagatgaggaagaagaagaaacaaCGAAGAGTACACGAGGCAGAAAGTTTTCCAAGTCGTCGGAAAAtggaggaaatatttttatagatcCTTTACAATCTCTGATTGAAAATGAAGATAATGAAGAGacagaaattagaaaaagtccATTAGAGAAAACCTTTTCATATTCGCTAAGAAAACGAAGAAGTCGACCTTCAATAAAAGATTCTCTACTCTCTCTGAGTGAAAATGAAGATATTGAAGAAccagaaattagaaaaagtccCAGAAAggaaactattttaaattctctacGAAGTgagagaatttttctaaaagataCGCTACTCTCTCTCAATGAGAATGAagatattgaagaaataaacattattaacgATTCAATCTACACGTGTGACATGTgcttaaaacaatttaatcacAAACAATCATTAGAGACTCATGTCTTAAAACATTTGGACGAGAAACTTTACAATTGTGAgcaatgtggaaaaaaattcatcgaaccatcaattttgaaaattcacatGGCTTTTCACTCGAGTGACACACCTTTGGATTGTGCACCTGAGATTGAAATTGACGCACCACTCAAGTGTAATATTTGTGATTTAAATGTAAGTAcagttacaattttaaaatctcaCATTCTTGGACATTTGGGTATTAAACCTTACGAGTGTCACATTTGCCTGCAGAGATTATCAACAAACTCCGCTCTACGTTCACATCTGACaattcataaaaatgaaaaacccTTCTCATGTGACATATGCTCGAAATCATTTCGCAAATTGGATTACGTCAAGTACCATAAAAGAATACACATGGAAATAAGACCCTATGAATGTGAAATATGTAACAGAAGTTTCAGTCGAAGTCACGATTTGAAAAATCACATGTTTTGGCACACGGGAAAAAGACTTTATCCATGTCCTAATTGTAATGAAGGTTtttcaaggaaaaaatttctctccgAACATATGttaattcacaaaaatgaaatggctgaagaaaattgcaaaatatcgACTTCTAATGATTTgtacttgaaaaaaagtattaattggAATACCGAAATGGATTTACAGCAAAAATCGAATTTCCcttctgtaattgaatcaaatgaaaatattgattcGAATATTCAAGAGAcgctgaagaaaaaattggaatcatcagaaataaaaaagaaaaaatcaaagaataccattaatttacataataaaccaTTTAACTGTGACATTTGTGGAGGATATTTCCaacgaaaatcaaattttactcGTCACAGGCGATTACACttcagggaaaaaaaattcgagtgTGACATATgcaagaataaatttatatcataTAAATACGTAAAGAGGCATATAATGGAtcacattaaaaatatgagaTTTACTACGGAGTACGCGTATTGTTGTTCAATTTGTGGTAAAAAATTTGCTCAATCAAGATATTTGAAGGCACACAAGAAAGTTCATTTAAAAccagaaacaaaatttgaaaattacaagtGCGACTTTTGCCAATTGAAGTTCAGAACAAAAGTTTTACATTATAAACACATGAAGAGTTGTCATAAAAATACAACAGAAGAGGAcccattattaataaaaaatcgggAATTTACAAgtcaaatggaaaataaagaaaatggtGATTTAGAATTCCAGGCAAAAGATATTAAGATAGAACTCACTTAA
Protein Sequence: MFKSCQVILTDINNVLKLKKLQNNKEENSSTDKSIKTHQAYKENLQLNENESSFINNSNNNSKGCTKIEAGPSKVPAVNIEKFHEKPENLKIPILNIERLSEKTEIKSLEIPLVSIERLCDGNEANNRKIPSVNAELSETRIWNKGTKALKIPIIEIEKLHWCTQCQRNFKSNRALQDHINTHNEEQNCNERKQFFACSVGENDFFESKENARNRKSQVLRPHNKEDKEEEEEKNVEIKATENTTSVPEEDFFEFVQCQRNLTSQNEEEKEDIEINVVGTSDQDENILESSQIQSQRFDFNDSSYSPSEIDVLNELNEILTSREEIFPKSSRNWKNIWKDPLLYENGDIEEIEIMKSSREKSFPISPQNRRSILNDHSHSQKENPDVDYMENTKRPKEKDFSKSPRNGRNNFTDSSQSVIENEDFKETEMCKSQEGKNRRNNFIDPLQSLIKKEDNRETESTKSPQEKTILQSRNIFIDPLKSLIETEDIEKTKIRKSPRVTNILNSLRTRLKDQLISLSENEEEDEEEEETTKSTRGRKFSKSSENGGNIFIDPLQSLIENEDNEETEIRKSPLEKTFSYSLRKRRSRPSIKDSLLSLSENEDIEEPEIRKSPRKETILNSLRSERIFLKDTLLSLNENEDIEEINIINDSIYTCDMCLKQFNHKQSLETHVLKHLDEKLYNCEQCGKKFIEPSILKIHMAFHSSDTPLDCAPEIEIDAPLKCNICDLNVSTVTILKSHILGHLGIKPYECHICLQRLSTNSALRSHLTIHKNEKPFSCDICSKSFRKLDYVKYHKRIHMEIRPYECEICNRSFSRSHDLKNHMFWHTGKRLYPCPNCNEGFSRKKFLSEHMLIHKNEMAEENCKISTSNDLYLKKSINWNTEMDLQQKSNFPSVIESNENIDSNIQETLKKKLESSEIKKKKSKNTINLHNKPFNCDICGGYFQRKSNFTRHRRLHFREKKFECDICKNKFISYKYVKRHIMDHIKNMRFTTEYAYCCSICGKKFAQSRYLKAHKKVHLKPETKFENYKCDFCQLKFRTKVLHYKHMKSCHKNTTEEDPLLIKNREFTSQMENKENGDLEFQAKDIKIELT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -