Basic Information

Insect: Leptopilina clavipes
Gene Symbol: prdm10
Assembly: GCA_001855655.1
Location: JUFY01033255.1:29505-34266[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00046 0.047 14.7 0.1 2 23 481 502 480 502 0.96

2 14 1.3e-07 1.4e-05 25.8 2.8 1 23 536 558 536 558 0.98

3 14 0.0034 0.36 11.9 1.2 1 21 566 586 566 587 0.95

4 14 0.027 2.8 9.1 0.8 2 23 611 632 610 632 0.95

5 14 0.00029 0.03 15.3 0.0 2 23 645 666 644 666 0.95

6 14 0.01 1.1 10.4 3.8 1 23 683 705 683 705 0.91

7 14 0.0068 0.7 11.0 2.6 2 23 714 735 713 735 0.96

8 14 0.049 5 8.3 0.1 1 23 742 764 742 764 0.97

9 14 0.00035 0.036 15.1 3.3 1 23 771 793 771 794 0.96

10 14 0.0028 0.29 12.2 3.1 1 23 799 821 799 821 0.98

11 14 1.8e-06 0.00018 22.3 1.5 1 23 827 850 827 850 0.96

12 14 0.0019 0.2 12.7 1.7 1 23 883 906 883 906 0.97

13 14 0.00015 0.015 16.2 2.4 1 23 928 951 928 951 0.97

14 14 0.0043 0.45 11.6 3.4 3 23 989 1010 989 1010 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00046	0.047	14.7	0.1	2	23	481	502	480	502	0.96
2	14	1.3e-07	1.4e-05	25.8	2.8	1	23	536	558	536	558	0.98
3	14	0.0034	0.36	11.9	1.2	1	21	566	586	566	587	0.95
4	14	0.027	2.8	9.1	0.8	2	23	611	632	610	632	0.95
5	14	0.00029	0.03	15.3	0.0	2	23	645	666	644	666	0.95
6	14	0.01	1.1	10.4	3.8	1	23	683	705	683	705	0.91
7	14	0.0068	0.7	11.0	2.6	2	23	714	735	713	735	0.96
8	14	0.049	5	8.3	0.1	1	23	742	764	742	764	0.97
9	14	0.00035	0.036	15.1	3.3	1	23	771	793	771	794	0.96
10	14	0.0028	0.29	12.2	3.1	1	23	799	821	799	821	0.98
11	14	1.8e-06	0.00018	22.3	1.5	1	23	827	850	827	850	0.96
12	14	0.0019	0.2	12.7	1.7	1	23	883	906	883	906	0.97
13	14	0.00015	0.015	16.2	2.4	1	23	928	951	928	951	0.97
14	14	0.0043	0.45	11.6	3.4	3	23	989	1010	989	1010	0.98

Sequence Information

Coding Sequence: ATGGACCCAAGGGCCCCTCCTGAAGGGGCCCCTGGCGATAATCCGGAGATGGCTAGCATCGACAAAACATCCGACGAAACTTGGTCCTCTGACAATAATGTACCATCGCCTCTCTGTGATCAGCGCAAGAAAATGAACAACAAATTACTGTTCTTAACgGTCGAGTATGTCGAGGATCAAACGCGAGACTACGCTCGTATGTTTTCCGTGTACGAGCCAGTTTCTTATTCACCGAGAGCATCATCACCACTTTCTGAGTTCGAACATCGTGTAAGTCCCCACGATCCAAATATGAGTTCAGCAGCGAGATATTCACCGACTCCTGTACAATTGCCACCATCGccatttcaaaattccgttGTTGTTCTACAAAATTCCCCATCGTCATTAAATTCATCGTCAGAAACAAATACAAggacaaatattaattttgtcacCGAATTAACCGATCAAAATACTTCGCCAAACATTCCACAAAATGACAATACAACAGATTTTGTTGAGTCAAATAATGAAGAAGGCCTCGTTCCTGGAAATGAATTGATCCTCATGCAAAGTGGAAACTCTGAATTGGAACCATCGGCACCACCTTTGATGCTAACGGGTTCGGATTTTGCACTAACTCGTGACTTTCTTGTGATGCATGATGATCAGATCAGTGTGATGAATTCGttcaaaactgaaaatttagaaataaacgAGACCTACATTCCAAGTCCAATGCAGACACTCAATTCGAGCGAGGATATCGATTTGTGTTCAACAGTTGAACCTGAAAAGGTTCtaaatacaatgaaaattgttgacaATCTTTTAGAATCGAAAGATGAAGAGGCACCAAAGAAAATTGTTCGTCGATCAAAACGAcaaataaatgacaaaaagaCTTATTggTGTACGGAGTGTGATACAATTTGTGCCGATGAAGATGGTTGCATGTCTCATAATGTTCAGACAATTGCCGATCAACCAGTTCCATCGCGAGCAATAGCAACACTTCCTAGTTCTTATTTgtcgataaataaattaaattccaacGATTTGTTACAACAGGAATTCGGTGTTTTTgcgaagaaaattattcgtAAACGAACACAATTTGGTCCAATTGAGGGAATTTTGTGCGCCTATGATGGCACTCcgtttactaatattttaccATTATTGTTCGAGAATGAAGACGGTGATTTCTTCAGGGTTGACGTTTCCAACGAGAATACTTCAAACTGGATGCGTTTCGTTCGTCCAGCATTGACCTATAAAGATCAGAATTTAATGATTTGTCAACAAAATGAaggtattatttttctcaccaCAAGGGACATTTCACCAAAAGAGGAATTGAGAGCCGGTCCTAATCCGGAATACGCCAAGAagcgaaatttgaaaattctcgaGGCTGATTCAGAAAATGCAAACgaCATTAGCGGTGATTCATGGCCTTGTTTTGAATGTAATCGTCTTTTCCCAACGTCAGGAACGTTACAAAGTCATTTGAATGTCCATGATAGTCCTCGTAGTGAGACAAAAGCCAGAAGTAAACGCAGGAAGCTTCACATCGCTTCCAATAAACTATTTAAAGTAGTCAACGATCAGAAAGTTCTCTACTCCTGTCCACATTGTTCGAAAGTATTTTCCCGAAGTTATAGCTTAAAACGTCACTTATTAATACATCCAAATAATAAGACGTCACATTACGAATGTTCCAAGTGTGGcgaaaatttcttatatccGAATAATCTTTGCCGTCACACgaaaatctgtcaaagtgaTAATTTACGAGAGGCTGACAAGAAGGGAAAGGAAAATTCTGGTCAAAATTCAGAATGGAAATGTACTGTGTGTAATTTGACATTCTATAAAGAATCATTGTTTGatcttcataaaatttctcacaATGTTAACAGTTTTGAGAATGGATGTAAATTTGTCGTTTGTCCTGAGTGCGgcgtaaaatttgaaaaacaaaacgaGCTTATTAAACATGTTTCGGAACATGGAAAATtaccaatgaaaaaaattgtaaacgcCACTAACTCGGCTGCCTATAAATGCTCAATGTGTTATAAACGTTTCGCCACTAAAGTTCGACTTCAACAACATTGTTTGGTCCACGGTGCTGAGGATCAAAAACCACTGCCAtgcaatatttgttttaaaagatttatgaATAATTCAGCACTCTCCTGTCATTTGAAGACACACAGAAAAGAGAAACAAATGTTTGAATGTCCGATGTGTAAAGAACTTTTCGACCAAATTCTGATGCTTAAAGATCACGTTGAATCGCACAGAAATCAGGACGATACATTTACTTGCCCTTACTGCCAgcgaaattttactaaatattcgGTTATTCGAAAACATATTAGAGCTCATCATTGTGAACGAAAGCATAAATGTACCTTTTGCGTAAAACGTTTCCCCACTGTCGATAAATTACGAATGCATTTACTACGACATTCAGATCACAGAGAATTTCAATGCGCTATCTGTGGAAAACGATTCAAAAGAAAGGACAAATTAAAGGAACACGTGACTAGAATGCACAATTCACAAAAACCAAGCAAGGAAGCAACGTCAACAATTAATCAAGTTAAGAAATTTGTGCCAAAGGTTAATCCAACCGAGTATGATCGATTTGTATACAAATGCCATCAATGTTTGGTTGGTTTTAAGAGGCGAGGAATGCTCGTCAATCATCTGGCGAAGAGACATCCAGATGTTCCGCCAGAATCTGTACCTGAActtaatttaccaattttaagGCAAACGAGGGATTATTATTGTCAGTATTGTGAAAAGGTTTATAAGAGCAGTAGCAAGCGAAAAGCACACATTATGAAAAATCATCCAGGTGCTGCGTTGCCACCAAGTAATCGTCATAAGGAAACAGACATTCCGGGCTTGCCAAATTCTACTTTTAGTCAAACTGTAGGAAGTGTTACGACAACACCCCAAGGATGCCAATGGTGTCACAAACAATATGCTAGTAAAGCGAAATTACTGCAACACCAGCGCAAGAAGCATTCGTCATTAATGGAACCAGCGGATCAGGTTCCAAGACCGCGAAATCGTCCAATTCACAATCCAAATGACGAATTAGTTCTGAGTAATATTAACTTTGTAATGAcgaataatgtaaatttgatGAACGACGAATTCGACTCGATTGGTCAGCAATTTGTCCGTATGCGCGATATACGCTGA
Protein Sequence: MDPRAPPEGAPGDNPEMASIDKTSDETWSSDNNVPSPLCDQRKKMNNKLLFLTVEYVEDQTRDYARMFSVYEPVSYSPRASSPLSEFEHRVSPHDPNMSSAARYSPTPVQLPPSPFQNSVVVLQNSPSSLNSSSETNTRTNINFVTELTDQNTSPNIPQNDNTTDFVESNNEEGLVPGNELILMQSGNSELEPSAPPLMLTGSDFALTRDFLVMHDDQISVMNSFKTENLEINETYIPSPMQTLNSSEDIDLCSTVEPEKVLNTMKIVDNLLESKDEEAPKKIVRRSKRQINDKKTYWCTECDTICADEDGCMSHNVQTIADQPVPSRAIATLPSSYLSINKLNSNDLLQQEFGVFAKKIIRKRTQFGPIEGILCAYDGTPFTNILPLLFENEDGDFFRVDVSNENTSNWMRFVRPALTYKDQNLMICQQNEGIIFLTTRDISPKEELRAGPNPEYAKKRNLKILEADSENANDISGDSWPCFECNRLFPTSGTLQSHLNVHDSPRSETKARSKRRKLHIASNKLFKVVNDQKVLYSCPHCSKVFSRSYSLKRHLLIHPNNKTSHYECSKCGENFLYPNNLCRHTKICQSDNLREADKKGKENSGQNSEWKCTVCNLTFYKESLFDLHKISHNVNSFENGCKFVVCPECGVKFEKQNELIKHVSEHGKLPMKKIVNATNSAAYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRKEKQMFECPMCKELFDQILMLKDHVESHRNQDDTFTCPYCQRNFTKYSVIRKHIRAHHCERKHKCTFCVKRFPTVDKLRMHLLRHSDHREFQCAICGKRFKRKDKLKEHVTRMHNSQKPSKEATSTINQVKKFVPKVNPTEYDRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAALPPSNRHKETDIPGLPNSTFSQTVGSVTTTPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADQVPRPRNRPIHNPNDELVLSNINFVMTNNVNLMNDEFDSIGQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676996;
90% Identity: iTF_00882410;
80% Identity: -