Lcla004187.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01035468.1:16015-19074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.035 3.6 8.7 1.0 1 20 68 87 68 88 0.95 2 12 0.0091 0.94 10.6 1.4 2 23 105 127 104 127 0.94 3 12 2.4e-05 0.0024 18.7 1.4 2 21 135 154 134 155 0.95 4 12 0.0007 0.073 14.1 4.2 1 23 307 329 307 329 0.98 5 12 0.00029 0.03 15.3 3.7 1 23 335 357 335 357 0.98 6 12 0.0026 0.27 12.3 3.9 1 23 364 387 364 387 0.95 7 12 5.8e-06 0.0006 20.6 1.6 1 23 393 415 393 415 0.98 8 12 6.5e-05 0.0067 17.4 0.8 1 23 420 443 420 443 0.94 9 12 1.1e-06 0.00011 22.9 0.3 1 23 450 472 450 472 0.97 10 12 1.8e-05 0.0018 19.1 2.1 1 20 476 495 476 498 0.92 11 12 4e-05 0.0041 18.0 0.7 1 23 504 526 504 526 0.96 12 12 2.3e-05 0.0024 18.8 1.2 1 23 532 555 532 555 0.98
Sequence Information
- Coding Sequence
- ATGAAATCGACAAacagGAGTGGTGGAATGGATATTGATGACAAAAGTCTAATTGTAGAAGAAGATTTTCAACgacaaaatatgaaaaatgaggAATCCAAATTTcagaatgaatttaaaatttatttagccAACAAGCTAAAAATTgatgagaaatattttgaaacagatttaaaaattcaaagtaagtTTGCAGAATATTTCAACTGTTTTTTCTGCgatgaatatttcattaacGAAAAGGATTTTCAAACTCATTTATTGCCAATTAAAACATCAACgaagaaaaaacaaacaaaaaatacaaatctcGAATGTGATCTgtgtagaaaattattcattacaaaatGTGGACTGAGAAATCATGTGGTCACTAGTCACAAGAATTTTGCGTGTTTTCTTCGTTGTCACAAATGTGAAGAACGATTTAAAGATTCAAGTGATTTTCAACAACATATGAATGAATGCAAAGACAATAAACGTTTATCAACTCAATTAgcgtcaaagtacTATCTACTAGATCCACTCaaactgaaagaaaaagatgaaaacttgaaaatttcaaaaagtcttgaaaatttcaaaataattgtgaGCGGTAAATCTAGACCGAAAAAGGAAATCAAAGTAAAGATCAATCAAAAGTTGGTCGAATTTCAAGAAATCGATTTAAAGGAAGAATCATTGGACACCAATTTGCTGGGAAATTTCTctgaaaatgaagaagaagaagaaaatctgCGAAATAAAGAAGTGAGTCAAAAATTTGAGGATATagatttaaaagaagaatatttggATCTAAACTTTTCAGAAGTGGAAGATGACAGtcgggaaaaaatttcaccGGAAAAGCAGGCATTTATGAAAACTGAGGGAAATTATTCCAAGGAGAAAACAACGCacgggaaaataatttacacctGTGAAATATGTCATGGTACTTTCGATCGAAAGAGCAGATTCACTGATCACATGTTTAAACACACAAGTTCTCAACCTCACAAGTGTTCAATTTGCATGAAGAGATTTAAAAGTATCAAGTATTTACAGAAGCACATGGAAGTTCACGATTTGTCAGATACTTCGCACAGTTGCGATCTCTGCGATTATAAAACCAGAAGAAAAGCTTATCTCAAATCTCACTATATTCGTAAACACACTCAAGAGTATAACTACACTTGTGAatattgtggaaaaaaattcaagctAAGAGCTGATTATACCACTCACATTAAGGATCACGACACAGGATCATTTATGTGCGATATTTGTGGAATaacttattcaaataaaagttcCCTCTACTATCATGCAACAAGGAAGCATAAAATGACTGTCAAGGAATTTGATTGTGAGATTTGTCAGAAGAAATTTGCAAGTCAGGCAAATTTGAACAGTCATATTCAATtgcacaataaaaaatataattgtgatCAGTGCGGTAGGGAGTTTAAATTCAAGTACAATCTCACGAAACATCTTTGGACGCATTCTCGTGAGAAATCGTATTTGTGTAACATTTGTGGCAAGTCTTTTCGTCAGATTAATTcgcagaaaattcatttattaactCACGCGGGTGAGAGACCTTATAGGTGTGATATTTGCGGTCAAAGTTTCACTCAAAGAACACCGATGATGTTACACAGGCGGAAGCAACACGTTGACGATCATTCTCGACCACCGTCGGTTAGCATTAACAATCTTCTACTCAACGTTcaagataaaattatcaacGAAACTGCAAAGAAGGCGCGAAATTAA
- Protein Sequence
- MKSTNRSGGMDIDDKSLIVEEDFQRQNMKNEESKFQNEFKIYLANKLKIDEKYFETDLKIQSKFAEYFNCFFCDEYFINEKDFQTHLLPIKTSTKKKQTKNTNLECDLCRKLFITKCGLRNHVVTSHKNFACFLRCHKCEERFKDSSDFQQHMNECKDNKRLSTQLASKYYLLDPLKLKEKDENLKISKSLENFKIIVSGKSRPKKEIKVKINQKLVEFQEIDLKEESLDTNLLGNFSENEEEEENLRNKEVSQKFEDIDLKEEYLDLNFSEVEDDSREKISPEKQAFMKTEGNYSKEKTTHGKIIYTCEICHGTFDRKSRFTDHMFKHTSSQPHKCSICMKRFKSIKYLQKHMEVHDLSDTSHSCDLCDYKTRRKAYLKSHYIRKHTQEYNYTCEYCGKKFKLRADYTTHIKDHDTGSFMCDICGITYSNKSSLYYHATRKHKMTVKEFDCEICQKKFASQANLNSHIQLHNKKYNCDQCGREFKFKYNLTKHLWTHSREKSYLCNICGKSFRQINSQKIHLLTHAGERPYRCDICGQSFTQRTPMMLHRRKQHVDDHSRPPSVSINNLLLNVQDKIINETAKKARN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -