Lcla004196.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01035468.1:40981-46849[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.088 9.1 7.5 1.7 2 23 129 151 128 151 0.93 2 15 9.8e-06 0.001 19.9 0.4 1 23 157 180 157 180 0.97 3 15 0.0086 0.89 10.7 1.2 1 23 255 278 255 278 0.93 4 15 6e-07 6.2e-05 23.7 0.9 1 23 284 307 284 307 0.97 5 15 0.0089 0.92 10.6 0.3 3 23 343 364 341 364 0.91 6 15 0.00068 0.07 14.1 5.6 3 23 378 399 376 399 0.94 7 15 0.00034 0.035 15.1 3.6 1 23 428 451 428 451 0.97 8 15 0.0021 0.22 12.6 1.3 2 21 458 477 457 479 0.93 9 15 3.6 3.7e+02 2.4 5.8 2 23 495 517 494 517 0.80 10 15 3.4e-05 0.0035 18.2 0.5 1 23 523 546 523 546 0.96 11 15 0.00029 0.03 15.3 1.8 3 23 553 574 552 574 0.96 12 15 1.7e-05 0.0017 19.2 0.9 1 23 579 602 579 602 0.94 13 15 0.0013 0.14 13.2 2.2 3 23 610 631 609 631 0.94 14 15 0.00017 0.018 16.0 2.2 1 23 636 658 636 658 0.97 15 15 2.4e-05 0.0025 18.7 1.3 1 23 664 686 664 686 0.98
Sequence Information
- Coding Sequence
- atgtgtgttaaaaataatgatattttattaacattgaaTATTTCATGTTTCAGGAAAAGACCCAGAGGAATTGAGGATAATAAACCATTGATACTGGAAAATATCATTGTACTTTctggaaattattatcaagGAATTAATAGTGAATCCTCGGCAAAAAGGAATTCGtcaaaaacgaattttaacgttccaattgataaaaattggttCCCATCAGGTGCACCGGGAGAAAATAATCAGCTGAAAATAAGAGTTCGTAAagaattaactaaaattattccCACTAATGAGAAATCTACAAATATCACAAATTCTCCAAGtgttttaattaatcgaaacgaaaatgaaattatgcCACATTCAAGTGATAATAAAAACGAATTAACGTGCAAcgtctgtttaaaaaaattctcatggAAGCAAACATTGAAAACACATTTCATTCGAATGCACACCGACAATTATGAATTCTCCTGCGAAGAGTGCggcaaacaatttaaaatttggggCGAATTGAGGAGTCACGTGAAAAAGCAACATAAGAAAGAAAACGAAATTGATCCCCAAGAGGGAATACcatcaagaaataaaaaaagagtcaGATACAAAAAAGTCGATCCCCTATCGACGGAGAATGAActctttcatttaattaatatcaatgatcaaaataattcaaataaaagtcaaattctAACAAATGATCCACTCGCAACCAAAACTGACATAAATAATCCACAACCGATCGAAAATAAGAACAAATTTATCTGCAAGATTTGTACAAAAACTTTCGCATGGAAGAGTACATGGAAAACACATTTCATTCGAATGCACACGGACAATTATGAATTCTCCTGCGAAGAGTGCgggaaacaatttaaaatttggggCGAATTAAGACACCACATGAGAATTCAACACAAAAAAAACGATGAAATTGATCTCCAAGAAGGAGTGCCAAcgagaaatagaaaaagagtcagacataaaaaaatCGATCCCCTCTCGAGTGAAAGTGCaatgttttgtaaaaattgcaaCACAAAATTCACCAATATTATCGAATTTAATGCCCACATTGATGGTATTCatgtgaaaattaaagaaacacAAGACAATAATCCACATTTATGTGAATTTTGCGGATATTCatacaagaataaaaatcatCTCAGCAATCACTTGAGACAACGGCACAATGTCGTGTCGATCAGGGAAgcagagaaagagaaagaaaattcgaCAAAATCAGCTCAGGAGACAAAAACattgaaagagaaattttactgTGAAATCTGTGGtaaagtttttaatgaaaaacgtTACTGTATCCGACATATGAAACGATCTCATTCGTCTGGGCAAACAATGACATGTAACGAGTGCGGTAAAGAATTCGAGAAGAAAATTCCCTTGATTAGACATCTACAGTGTCACAATTATCCAAAAACacggaaaattggaaaaaaacatGAAGAATGTACCTGTGAAATTTGTGGTCTCAAAGTACGATGTAGAGCAACATTGAAAGTTCATCATCTTCGCAAGCACTCgcaagaatttaatttcccttGTGAATTTTGCGAAAAAGTATTCAAAGTTCGAGGTGATCTCACAACGCACACGAGACTTAATCACAAAGAGCCGCCGGCAATTTGTGAATTATGTGGCAAAGTGACGAAAAATAAACACTCACTTTATATTCATCAAAAATACAATCATTTTCGAACAAAATTTATCTGTCCGATATGTAAAAAATGTCTCGTCTCACAGGAGAATCTCAATCAACATATAAACGATTATCATGCAAAGAAGGAGAGAGTTTTTTGtgatatttgtaaaaatagttttatgcACAAATCAAGTCTTACGAATCACATAACCCTTATACATAATGAGAAAACATTCGCGTGTGAGACatgtggaaaattatttggacGCAGTTATCGACTCAAACATCATCTACTCACGCACACGGATTTACGACCCTACATTTGTCGTCTCTGTGGTAAACAATTTAAGCAGAAACTCAGTTTACTCAGTCACATCAAGAGTCATCCCGAGGAACATCCACCCATTCCCACTAGTTCGAGTTCGCCGAGACGAGTGGCAGTTCCGGTGTTAGTAAAGGATGGAAAGCCGTGCGGAAGTGGCGGCGGTGGCAACGAGGGCAGTAGGGGCGGTCCGTCGGCGGCACTCGCGAGTCCCGCGCCCCACATGACGACGGCCTCAAGTCCCCATGGGACTCATCATGGGGCCTCCGTTGCCCATCATTCGGTCGTTGGGGTCGGTCACGTGATGAGCTCGAGTCAGAGTTTGCAGCATTGCTCGTACTCGAGATCGGCGGCACAACAATCAAtgcagcaacaacaacagccACAATGCAGCGCGTACCTACCACTCCAAGGTCGGGCCTGGTAG
- Protein Sequence
- MCVKNNDILLTLNISCFRKRPRGIEDNKPLILENIIVLSGNYYQGINSESSAKRNSSKTNFNVPIDKNWFPSGAPGENNQLKIRVRKELTKIIPTNEKSTNITNSPSVLINRNENEIMPHSSDNKNELTCNVCLKKFSWKQTLKTHFIRMHTDNYEFSCEECGKQFKIWGELRSHVKKQHKKENEIDPQEGIPSRNKKRVRYKKVDPLSTENELFHLININDQNNSNKSQILTNDPLATKTDINNPQPIENKNKFICKICTKTFAWKSTWKTHFIRMHTDNYEFSCEECGKQFKIWGELRHHMRIQHKKNDEIDLQEGVPTRNRKRVRHKKIDPLSSESAMFCKNCNTKFTNIIEFNAHIDGIHVKIKETQDNNPHLCEFCGYSYKNKNHLSNHLRQRHNVVSIREAEKEKENSTKSAQETKTLKEKFYCEICGKVFNEKRYCIRHMKRSHSSGQTMTCNECGKEFEKKIPLIRHLQCHNYPKTRKIGKKHEECTCEICGLKVRCRATLKVHHLRKHSQEFNFPCEFCEKVFKVRGDLTTHTRLNHKEPPAICELCGKVTKNKHSLYIHQKYNHFRTKFICPICKKCLVSQENLNQHINDYHAKKERVFCDICKNSFMHKSSLTNHITLIHNEKTFACETCGKLFGRSYRLKHHLLTHTDLRPYICRLCGKQFKQKLSLLSHIKSHPEEHPPIPTSSSSPRRVAVPVLVKDGKPCGSGGGGNEGSRGGPSAALASPAPHMTTASSPHGTHHGASVAHHSVVGVGHVMSSSQSLQHCSYSRSAAQQSMQQQQQPQCSAYLPLQGRAW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -