Lcla015879.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01035475.1:7617-12066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.5 2.6e+02 2.9 4.7 2 23 278 300 278 300 0.96 2 20 0.046 4.8 8.4 2.1 1 23 354 376 354 376 0.98 3 20 0.12 12 7.1 0.9 1 23 425 447 425 447 0.98 4 20 0.01 1 10.5 0.2 1 20 484 503 484 505 0.94 5 20 0.0099 1 10.5 1.4 2 23 546 567 545 567 0.94 6 20 0.076 7.8 7.7 0.2 3 23 592 612 590 612 0.95 7 20 0.00061 0.063 14.3 0.1 1 23 618 640 618 640 0.97 8 20 7.3e-06 0.00076 20.3 0.2 3 23 677 698 675 698 0.92 9 20 1.5e-05 0.0015 19.4 0.6 2 23 705 727 704 727 0.96 10 20 3.7e-05 0.0038 18.1 0.1 2 23 736 758 735 758 0.95 11 20 6.9e-05 0.0072 17.3 0.3 1 23 767 789 767 789 0.93 12 20 0.1 11 7.3 0.1 2 19 827 844 826 845 0.95 13 20 0.027 2.8 9.1 0.0 2 23 861 882 860 882 0.96 14 20 0.0025 0.26 12.3 1.8 1 23 897 919 897 919 0.97 15 20 7.5e-06 0.00077 20.3 0.2 2 20 939 957 939 959 0.93 16 20 0.11 11 7.2 0.7 2 23 984 1006 983 1006 0.90 17 20 0.0002 0.02 15.8 0.4 2 23 1027 1049 1026 1049 0.94 18 20 0.0099 1 10.5 1.1 1 23 1055 1079 1055 1079 0.93 19 20 0.11 11 7.2 3.5 1 23 1084 1107 1084 1107 0.94 20 20 0.63 65 4.8 0.6 2 23 1139 1161 1138 1161 0.93
Sequence Information
- Coding Sequence
- atgaaCGAAGTCGAGGAGTTACAGGGCCTGGAAAGTGCCTGTCGACTTTGTTTAACCACCGATGAAACAAGATCTTCCATTTTCGGTGCAGCTTACAACGTAGATCCACTGATAGTGAAAATACAAAACTGTTTGTCTCTTCAAATTTCTCAAGAGGATAAATTATCGACATTAATTTGCATCACTTGCGTTAATAAAGTGAATCAATGGCATCAATACAAGAACGATTGTCTTCAGTCTCAGAACAAATTATCCGAATGGCTTGCAAAACAATCGGAACCACTTCCGGTTGTTACCGTAAAGCAGGAAGTGGAAGAAGTTTCCACCGAACAATCAGAAAAGATTCCTGAGAAAATTGTGGAAAAGGAAAcgataattgaaaatgagaaaCAAGGGGAAAGTGCATCCGAACTAATTGAGAGTTCAATGAATCCTGAGATTATGGAAAATGGCGAAATTGGGGAAACGAATGTTCCGGAGGAAAATAGAGTCGAGAGATTggagaatggaaaaaatgggGAAACAATGGAAACTGGGGAAACGGCAGTAAATGTTATGAAGGAAGTTGAGAGGCAAATGGAGGTCGAACCGGCAGAAGTGCGAGAAAGTGTCAAGCGTCGATTGTCGAAAGATTTTGGAAACGATCCGAAGCGGTTCAATGCTCTGCCGATCAAGACGGAACCAACGGACGATGACATGAACGCCATGGAGGAAAATAGTTTGAATACGGTCGAAGTTAGTTTGCAGAAGGCTCCATTGTCCCTCAAGGGGAAGAAGAAGATACGCCGTGGTCCTCATACACATTTCCGTGGTGCTAGAATTTTCAAACGAAAGTGTCTCCATTGTCAGATTAATCTCCACTCGAAGACTTCGTACGCGAAACACATGGCTCGATTTCATTCCAAATCGGTTCCGAAACCGATCACGAATAGCAATAGTAATTTAGAGGTGGACGATGGAGAGGAGATGATCGAGGATGTCGAGGAAGAATTGGAAAATCTCGAGGAGGACGCGCCATTGACACCCGTTCAGCAGAATATCATCAGTCAATTGAAGACCTACACCTGTTACTCTTGCGAGCAATCGTTCCAGGATCGTCGCAGTACTTTGAATCACATTCGACAGCACATGCCGGATCTACGAACCTTCACTTGCGTCGCTTGCCTCACGGAATTCGGGGATCAAAATACCTACAAGGAGCATTGTGAGGCGTCATTCGAGTGCGCCATGAAGATCGCCCTCGTTGTTCCCGTTCAGGGAACGGAGAAATACTTCACCTGTAATATGTGCCTCCAACCAATGTCCAATCGAAAAGAACTCCTCAGCCACTTGACCAAGCATTCCGACAAGCAATACGAGGAATTGATGTCACCACCTCCGAAACTCACCCCAATGACTCCGATCCCTCCATCTTCCCTGCCGTACGGAATGGGCGATCCGGCCTACAATCACGAGTGCGACCTCTGCGGAATGATCTATCGCTACAAGCCGAATATGATCAAACACAGGGAACTTTGCGCCAGTTTACAACCAGAGGGAAGAACATCCTACAAGTGCATCGACTGTGGAATGACATTCCTGGTGTTTAATAAATTCCACAGTCATGTGACGGTCGAGCATAAGAAGAAGGAACTCAAGTGTCCAAAGTGCGCGGCCAAGTTCCGCTCGCCTAGTGATTACTTGACACATCACGAGTTCCATCGGAAGAAGAACAATCTCAAGGATCCGCAGATCTGGAGTGTTGATGGTGACGATGTGAAGACTAGACTTGCCTGCTCCCTTTGTAATCAATTGTTCCAAACAAGGGCCGAATTGGCCGAACATAAGAATCTACACCTGAAAGTGAAGATCTACTCGTGCGTGATTTGCCGCAGTATGTTCAGCAGTGCCGGAGCACTTGAGGTACATATGAAGGATCATGGAATCGAGGATCCGAGTGAACGAACAGCGAACACTTCCTGTATGGAGTACGGACAGGAGAGCGAACTGGGCAATACGATCGTCAACGCGGTGGTGAAAAACACCGAGTGCATCGAGTGCGGGAAGACGTTTTCCAATGTCGCGAATCTTAAGCGCCACATCCGGAATGCTCATGGCGAGGAGAGACGTATCGAGTGCACGGATTGTAACCGCACATTCAAGAATAAGGAATCTTTCGATGAACACCAACGCATTGCTCATAATTCTCCAGAGAAGACTGTACTCACCTGTCCCGAGTGTCCGAAAACTTTCGTCTTCCAAGCGAATCTAGATCTTCACATTATGAACGTTCATGAGAGCAAGGAACAACGGAATAACCACGAGTGTGAACTGTGCGGCAAGAGTTTCGCCGAGGAATCCTCGCTCAAGATCCATCGCGGATGGCACAATCGGGCAAATTCGCGTTTCAGTCTCGAAACATCGGGTCCGAAACCAGCAAAGGCGAGGAAATCGTTCCCAAGTGTTGCGCTGACACAACAACAACAGGTAATACAACTCCAGTGTCAGGTGTGCGATGACAAGTTCAATGACGTCGGTGATCTTCGCAAACACGTCTGGGATGTCCATTGCGCCAGAACGGCGAAAATCAAGCAGGAAATTCAGTGCGGTTTGTGCTCGAGTGTCTTCCCAGATCAGCAGACTTTGGACGTTCATATGGAGTGGCATGAACGGAATCCCATTGAGGAAACAAGTGCTAGTGGTGGTGAATTTCGCTGCGAAATCTGTGACAAGTATTACAGTTCAAGGAAAATTCTCTGGCGACACAAGAAACTGCACAAAGTTGCCCAAGTGCCGTCCTATCAGCGCTTTCAGTCCTTACCGATCAAGAAGCCAACTTGTAACATTTGTGGCAGATCGTTCTCATCCGAGTCAGCATTGAAGCGGCACAAGGCAATGTCACCGGACTGCCAATTCGGAAGAGCGGTTCTTCCCTCAAGTTCGACGGACGAAGCAAGAAAGAAGCCGGTCACTTGTCACATTTGCAAAACGGTCTTCCCGAGTATGAGTATTTTGTATCAGCATAAGCAATTGGTGCACAAAACGGTGGTACGGGAGAGAAGTACGGAATGCGTGCCAATATCGAGTGTCGAGGGGGTCAAGTGCAACATTTGTGGGAAACTCTTCTCGGGTGTGTCGAATTTAAAGCAGCATTTTGCAATGAAACACAAGAGTGTGACGACCCATCCGTGCACGGTGGCGAATTGCAAAATGATCTTCTCAACGCCCCATGCGCTCAAGAGTCACGAACTCCAGCATTCGAATATGATTTACAGTTGTACGATGTGTGAGAGGCACTTCTTTCACAGGGGGGTCATGGAGAAGCACATCTACAATGCTCATCGAGCTGTTTATGAATCGGTGGGCGATGACAAGGACACGCTCTTCAAGGAGACGGACCTAACCTCTTACACTGTCAAAGGCGCCAGTGGAACCGTCTGCCCTAGGTGTAAAATCAAGTATCCAAATATTAAGGCAATGAAGATTCACTATTTCAAGTTCCATGAGACTCTCGGTTGA
- Protein Sequence
- MNEVEELQGLESACRLCLTTDETRSSIFGAAYNVDPLIVKIQNCLSLQISQEDKLSTLICITCVNKVNQWHQYKNDCLQSQNKLSEWLAKQSEPLPVVTVKQEVEEVSTEQSEKIPEKIVEKETIIENEKQGESASELIESSMNPEIMENGEIGETNVPEENRVERLENGKNGETMETGETAVNVMKEVERQMEVEPAEVRESVKRRLSKDFGNDPKRFNALPIKTEPTDDDMNAMEENSLNTVEVSLQKAPLSLKGKKKIRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSKSVPKPITNSNSNLEVDDGEEMIEDVEEELENLEEDAPLTPVQQNIISQLKTYTCYSCEQSFQDRRSTLNHIRQHMPDLRTFTCVACLTEFGDQNTYKEHCEASFECAMKIALVVPVQGTEKYFTCNMCLQPMSNRKELLSHLTKHSDKQYEELMSPPPKLTPMTPIPPSSLPYGMGDPAYNHECDLCGMIYRYKPNMIKHRELCASLQPEGRTSYKCIDCGMTFLVFNKFHSHVTVEHKKKELKCPKCAAKFRSPSDYLTHHEFHRKKNNLKDPQIWSVDGDDVKTRLACSLCNQLFQTRAELAEHKNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDPSERTANTSCMEYGQESELGNTIVNAVVKNTECIECGKTFSNVANLKRHIRNAHGEERRIECTDCNRTFKNKESFDEHQRIAHNSPEKTVLTCPECPKTFVFQANLDLHIMNVHESKEQRNNHECELCGKSFAEESSLKIHRGWHNRANSRFSLETSGPKPAKARKSFPSVALTQQQQVIQLQCQVCDDKFNDVGDLRKHVWDVHCARTAKIKQEIQCGLCSSVFPDQQTLDVHMEWHERNPIEETSASGGEFRCEICDKYYSSRKILWRHKKLHKVAQVPSYQRFQSLPIKKPTCNICGRSFSSESALKRHKAMSPDCQFGRAVLPSSSTDEARKKPVTCHICKTVFPSMSILYQHKQLVHKTVVRERSTECVPISSVEGVKCNICGKLFSGVSNLKQHFAMKHKSVTTHPCTVANCKMIFSTPHALKSHELQHSNMIYSCTMCERHFFHRGVMEKHIYNAHRAVYESVGDDKDTLFKETDLTSYTVKGASGTVCPRCKIKYPNIKAMKIHYFKFHETLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -