Lcla008255.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopilina clavipes
Gene Symbol
-
Assembly
GCA_001855655.1
Location
JUFY01036509.1:17331-22116[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00023 0.024 15.6 1.4 2 23 790 811 789 811 0.97
2 16 0.00049 0.051 14.6 0.2 1 23 816 838 816 838 0.96
3 16 8.5e-05 0.0088 17.0 0.7 1 23 844 866 844 866 0.98
4 16 0.00015 0.015 16.2 0.3 1 23 872 894 872 894 0.98
5 16 0.0066 0.69 11.0 1.0 2 23 901 922 901 922 0.97
6 16 8e-06 0.00083 20.2 0.3 2 23 929 952 928 952 0.97
7 16 0.0025 0.25 12.4 0.9 1 23 958 981 958 981 0.98
8 16 3.5e-05 0.0036 18.2 0.2 1 23 987 1009 987 1009 0.97
9 16 7.5e-05 0.0078 17.1 1.7 1 23 1015 1037 1015 1037 0.98
10 16 6.3e-06 0.00065 20.5 1.9 1 23 1041 1063 1041 1063 0.98
11 16 0.00022 0.023 15.7 2.3 1 23 1069 1091 1069 1091 0.97
12 16 0.00082 0.085 13.9 4.3 1 23 1097 1119 1097 1119 0.95
13 16 0.0087 0.9 10.6 4.6 1 23 1125 1147 1125 1147 0.97
14 16 0.075 7.7 7.7 4.0 1 23 1153 1175 1153 1175 0.95
15 16 0.017 1.8 9.7 2.1 2 23 1181 1202 1181 1202 0.98
16 16 0.95 98 4.2 2.2 1 19 1209 1227 1209 1229 0.95

Sequence Information

Coding Sequence
ATGGACGTGACTTTAAAACGCCTGACTGCGGATGGCTATTTTGCCAAcgaagttttatttttaaatcaacaaaaatcgtattCCTTTGGACGTAAATCGAAAAACGATGTTGTACTATTTGCACCTACAGTATCAAAACATCATTGtatttttcatcataattCTGATGGTTTCTTCGTCGAAGTgttgcagagcTGGGCGGGAGTTGTTGTTAatggcaaaaaatatttatccggCTCGACGGTTTACTTGAAAAACAACGATATTGTTGGTATTGGGcctatatttaaatacaaagtggaaataaagccGCGAACTGTGAGCAATGATGCCGAAATGCATTTCACGTCTGATTTTGAGACAGATTTTGAAAGCGTCAAAGAAGAAGACACGGAATATGAAGACACAGAATTCGAAGCCGTGACGAGCGGTCACGAAGACACGGATTACGAAGAAATAAGAAGGCACAGAGAACTCGATTTGGAAACAACGAGGGAAATAAAGATAGAATTAAATCCAGAGGATCAGAGAAAGGAAATCACATCACAGGAAATTAATTCAGCAATGGAAATATCTTTCGATGACGATGAAGAGAAACCACAGTTACCAATTGATTTAGTCCCGGGAAATAATGTAAGTACAACGAAAATTATCGGCGAAAATGAACGCGAATCGGATACATCGAAAAATTTCGACATTTCAATGTCGACAcgtcagaaaaattatttacgacGCAATTTCCGTCAACGTTCAACATTATTggatattaaatcgaaaattcccaatgaaaatgaagagcgaatttttgaaaaaacgggaaaaattgcagaaaatagtgaaattccCGAAATGATTAACAAAACTTccgaagaaaatgaaatttccaaaGAGAAACGAATTagtcagaaaaaaaacgaattttccaAAGAAAGTCAAATTTCCCcggaaaatgacaatttttccaaagaaaatcaaactgcctcgaaaaatattattcacgAAGAAAGTATAATTGCgggtgaaaatttattgaacgAAACAAATGTCGTGTCAAAcgaacaattgaaaaataacgaGAAAATTAATGCAACAAGTTCAATTATTGCCGCGAGTGATAAACACGAATcgaacaaagaaaataatttttattcccaaAAGGAAGTCGACCATTTTGtctcaaaattcaataaaacttCCCTTCAACCGTTCATTAATCTCGAGAGATATACAAAATCAAGTGAAACACTAAATGAAAAACCAaaatcaacaacaacaatgaAAAATCATTCGGTAATTGTGCACGAAAAATTGCCACAACGAACAAAACGTTTtagtaaaaggaaaaaagatttacAACAAAGTATTCGTAAATGGGTGAGAAATCCATTCGCGCAAAAAGTCACCGTCAATACGGATCGTTTACGCGAAGTGAAAATTATCCTCGaacgtttaaattttaaaaagccgCAAAATTTCCCTCTAGATTTGGAAAATCGGGAGAAAATCACGTCGAAGGGCAAATTTGAGTCTGAAAATCGTGAAAAATCGGGAGACGAACCAGAAAATCAGAAGAAAATTGCGTCGAAAGGGAAATTTGAATCGGAAAAATCGATAATCGAACCGGAAAATCGTGAGAAAATTGCgtcgaaaaagaaatttgactCAGAAAAGCAGGAAAAATCGGAAAATCGTgagaaaattgaatcaaaacaaaaatttatttcagaaaagcGGAGAGAATCGGAAAATCGAGTGAAAATGGgatcgaaaaagaaatttaaaacagaaaatcGTGAAAAATCGATAAACGACTCTGAAGATCCGGAGAAAATTGCATCGAAACGAAAATTAGAATCAGAAAAGTCGGGAAAATCGGAAAATCGATTGAAAATCGcatcgaaaaagaaatttaaagttgaaaatcgCGAGAAAATcgaatcaaaacaaaaaattgtttcagaaAAGCGGAGAAAATCGGAAAATCGAGTGAAAATCGgatcgaaaaagaaatttaaaacaaaaaatcgtgAAAAATCGAAGAAGGATTCGATGAGtagagaaaaattggaaagaaaattggagagcgattttttgaaaaaacgtcttATTGTTACATTAACGGATGTAATGAAAGAgggtaaaaattcattgtctTCGAATTATTCATCAGAGGAAATCGGCATCGATGTCTCGAAATTAGACGCATTTCTTTCTGATAATCTAATGAAAAAATCGGTTTCATTGAAGAAATTATCTCCGTCTTTGCTATTGAAGAAAAGGCAAAATCGTCGAGAATCTCCAGTTACTAAAAATGCTTTATTAACGAAATATTTCCCGTTGCTGAAGAAAAATTCCGATAGAAGGTTAAAATGTCCGAAATGTACAAAAACGTCCATTGGAAGACGTCAATTGAGGCGCCATCTGTTAACGCACGGCGAGAAACGTTACGCTTGTTCGATTTGCGACAAACGTctggcaaataaaaattatttgcgtATCCATGAGGCGATGCACGGCCCTGAGCGTCGATTCAAGTGTGATAAATGCGACAAGGGTTACATGGTGAGGAATGAATTACAAAAGCATCTCGCGACACATTTTAACGAGcgtaaatttatttgtgaTATTTGCAAAGGTACGTTCAGAACAAGAGACGATATTTTTGCTCACATGAAAGTGCACTTGGGAGTGTTAAAACGAAAATGTCCATTGTGTAATAAGATGCTAGCTAATCAACATTCGCTCGATTATCATTTGACAATTCACGCGAATACAAAGTCTGTGAAATGTACCGAGATTGGTTGTAATCGATCATACGTTCGCCCATCAGATTTGCTGAGACATCAAAAAACGCATGAGAATCGAAAGGAGCACAAGTGTCCATATTGTGAGGTTAGTTTCAATTATGTGAATGTACTCGATCGACATGTGAGGACACTACACACGAAAGAAGGACTCTTTAGTTGTAAATTCTGCGATAAGGAATTTCCAGTGAAATCAATGTTGGAAATACACATAATGGGACACACTGGTGAACGTCCCTTTATTTGTCagatttgcAAAAAAGGTTCCAGgagtcaaaaatatttgagaatTCACATGAAATCGCACGAGGCAAAATTCACCTGTAACGAGTGTAAGGAAATGTTTGTCGACAAATTTAAACTTAGACAACAcatgaaaatacattttccaGTTAAGAAACATATTTGTTCCTATtgcaaaatggaatttttgaaaCCATCGAATTTGAGAAACCACATACGAACGCACACCAATGAGAGGCCATTTCATTGTTATCTTTGTGACAAGTCatataaacttaaaagtgATCTCAAAGTTCACATGTACTTTCACACCGGTGAGTATCCAtttcattgtaaaaaatgtaacaagGGCTATGAGAAGCAGAAACTTCTCGACAATCATTATCGACTTCACACCGGTAAAAAGCCATTTGTTTGTGTTATTTGCAATTTCACCTTTAGATATAAATCGTCATGTAATAATCATTATGCAAATCATAAATTGAATGTgagaaaatgtgaaatttgcGAATTGTATTTTCGCGCGAAAACCACTTTTAGGAAGCATTCGAGAATGCATGAGAAATTAGCAGGAAAGTATAATTGTACTTCTTGTAAACAGAGATTCAAGATTCAGAAGGATCTTGTTGAACATTGTCAGAAGATACTCGTGACATTGGGGAAATgtgagaaaaaatga
Protein Sequence
MDVTLKRLTADGYFANEVLFLNQQKSYSFGRKSKNDVVLFAPTVSKHHCIFHHNSDGFFVEVLQSWAGVVVNGKKYLSGSTVYLKNNDIVGIGPIFKYKVEIKPRTVSNDAEMHFTSDFETDFESVKEEDTEYEDTEFEAVTSGHEDTDYEEIRRHRELDLETTREIKIELNPEDQRKEITSQEINSAMEISFDDDEEKPQLPIDLVPGNNVSTTKIIGENERESDTSKNFDISMSTRQKNYLRRNFRQRSTLLDIKSKIPNENEERIFEKTGKIAENSEIPEMINKTSEENEISKEKRISQKKNEFSKESQISPENDNFSKENQTASKNIIHEESIIAGENLLNETNVVSNEQLKNNEKINATSSIIAASDKHESNKENNFYSQKEVDHFVSKFNKTSLQPFINLERYTKSSETLNEKPKSTTTMKNHSVIVHEKLPQRTKRFSKRKKDLQQSIRKWVRNPFAQKVTVNTDRLREVKIILERLNFKKPQNFPLDLENREKITSKGKFESENREKSGDEPENQKKIASKGKFESEKSIIEPENREKIASKKKFDSEKQEKSENREKIESKQKFISEKRRESENRVKMGSKKKFKTENREKSINDSEDPEKIASKRKLESEKSGKSENRLKIASKKKFKVENREKIESKQKIVSEKRRKSENRVKIGSKKKFKTKNREKSKKDSMSREKLERKLESDFLKKRLIVTLTDVMKEGKNSLSSNYSSEEIGIDVSKLDAFLSDNLMKKSVSLKKLSPSLLLKKRQNRRESPVTKNALLTKYFPLLKKNSDRRLKCPKCTKTSIGRRQLRRHLLTHGEKRYACSICDKRLANKNYLRIHEAMHGPERRFKCDKCDKGYMVRNELQKHLATHFNERKFICDICKGTFRTRDDIFAHMKVHLGVLKRKCPLCNKMLANQHSLDYHLTIHANTKSVKCTEIGCNRSYVRPSDLLRHQKTHENRKEHKCPYCEVSFNYVNVLDRHVRTLHTKEGLFSCKFCDKEFPVKSMLEIHIMGHTGERPFICQICKKGSRSQKYLRIHMKSHEAKFTCNECKEMFVDKFKLRQHMKIHFPVKKHICSYCKMEFLKPSNLRNHIRTHTNERPFHCYLCDKSYKLKSDLKVHMYFHTGEYPFHCKKCNKGYEKQKLLDNHYRLHTGKKPFVCVICNFTFRYKSSCNNHYANHKLNVRKCEICELYFRAKTTFRKHSRMHEKLAGKYNCTSCKQRFKIQKDLVEHCQKILVTLGKCEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-