Lcla001658.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01034787.1:3144-5867[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-10 6.7e-07 29.4 0.0 3 43 13 54 11 55 0.93 2 2 3.3 3.8e+03 -1.8 0.0 2 10 66 74 65 77 0.67
Sequence Information
- Coding Sequence
- ATGACGCGTGCATCaggatattttaaatattcggcGGAGCAGTTAGAAAATGCACTTAAAGAAGtgaaaaagagtaaaaaatcaataagGAAAATTGCAAAGGAATATGAAGTTCcattttctactttaaaagacaaatttaaaaataaacatccTCAAAAGCATGGACATCCTTACGAATTATCGTCTATAGAAGAAACGACACTTGTCAAAGCTTTGGAAACTGCAGGATCTTGGGGATTTCCTTTGACAAGCCATGACCTCCGAGGCATTGTACCACTGATTCTCGACactaatgaattaaaattttccctacAACAACGACAGGACCTAACAAGTTTAAAGGATCAAATAATTGAGAACATTGTGAAAGGATTACTCGTTTAG
- Protein Sequence
- MTRASGYFKYSAEQLENALKEVKKSKKSIRKIAKEYEVPFSTLKDKFKNKHPQKHGHPYELSSIEETTLVKALETAGSWGFPLTSHDLRGIVPLILDTNELKFSLQQRQDLTSLKDQIIENIVKGLLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -