Lcla003993.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- KBTBD12
- Assembly
- GCA_001855655.1
- Location
- JUFY01032314.1:50192-52476[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.2e-06 0.0014 18.8 0.1 2 42 196 236 195 239 0.87 2 5 1.2e-09 1.4e-06 28.4 0.0 5 42 249 286 247 289 0.86 3 5 0.0014 1.7 9.0 0.0 19 34 314 329 301 335 0.77 4 5 0.77 8.8e+02 0.3 0.1 31 45 343 358 342 358 0.93 5 5 6.7e-12 7.7e-09 35.7 0.0 5 41 361 397 360 400 0.93
Sequence Information
- Coding Sequence
- ATGTCAGAGGTCAACAATCAAATTCAAGTTATTGAAAGAACTTGTCTACAATGGGAAGATTATCAAAATCAATTCTCTGGTGTTGTTCGACAACTTCTAGACGAAAATTGCATGGTGGATGTTACACTGTCTGTGTCGGGACAACGCATTCCTGCTCATCGCATCGTTCTTTGTGCTTTCAGctcttttttcaaaGAATTGTTGGGTCAGGTGACTGATGATCATCCAGTTATTATTTTGACCGGCATGGCTCCTGAATGTGTTAAAGGAatcattgaatttatttatcaaggAGAAGCTTATTTTCCTGCTgacagtataaaaaatattttggatactgcattttatcttaaaattgCTGGATTAATGGAGtATAAAATCAGTGAGACTGTTTCCAAGTTAAGGGATGATAGTGAAGAAGTTGATGTACCAGGTTCTAATTTGAATGACATAGAAGAAGAAGTTTTGGATGTTTTTGAGCATGTTTATGAAGATGCGAATGATCAATCTGAGCAAAGTGCAACGGAAGAAAATtctgaaactaaaaaaaggAAGCGACGTTATTCAATGAAACGAGAATATAGTGAAGATATGCTCGCTGCagctattaataatttacgtGAGGGACAGACCTTAATTGAAGCTGCTACTAAAAATCATATTCCTCGTTCTACTTTATATATGCGAGCAAAAGCCTTAGGAATTCAATTACAGGCCTGCAGAAATGAATATCCCGTAGAGTGTATGAAAGGAGCAATTGACGCTGTTATCGgaGGATCGAGTTTGCAGACTGCATCGGAATTGTTCGGTATTCCAAAAACTGTTCTTTGGCGACGAATGCAAAAAGAAGGCTATCAAGTGTTTCGTCCAGAATTGAAAAGAACTTATGGCTCGGATAAAAGAGAGGCTGCAGTAAAAGCATTAGAAAGAGGGGAAAATCTTTCAAAAGTGGCACAAGAATatcaaaTACCAAAGACAACATTGTTTCGAGATAAGACACGATTAATTGATCAGGGTAAGTTACCAAGTTCATTttggaaaaagagaaaaacggAAAACGAGACTGTTAAACGATTTCGACTCGAGGAAGCTGTAGCGGCAtgtaaaagtggaaaaatgtCACAAGCCGCTGCATCCGTATGTTATCGTATTCCAAAAACAACGATATGGAGGCGATTGCAACAAgacaattcaaaaaataagagaaaaatcaaATCTACTGGTTCAATGAATGCATCTGCTAATACTATTGATACTGATGAATTCACATTTTGTGAGGTTACTTCAGGAATTCCGATAACGTACATAGATGAGAATAGTATTCCCGAAGATTCAGTTATAATTCTCACAACTGAAGATGTCGAGGAATTGAGTTTGGAAAATCGGGCGCAGATCATTGTAAATTCGaACGTTAAtcaagaatttatttcaaatgcgGAAAGTGATTCCAATTACACTGTTTCGAAAAGTTAG
- Protein Sequence
- MSEVNNQIQVIERTCLQWEDYQNQFSGVVRQLLDENCMVDVTLSVSGQRIPAHRIVLCAFSSFFKELLGQVTDDHPVIILTGMAPECVKGIIEFIYQGEAYFPADSIKNILDTAFYLKIAGLMEYKISETVSKLRDDSEEVDVPGSNLNDIEEEVLDVFEHVYEDANDQSEQSATEENSETKKRKRRYSMKREYSEDMLAAAINNLREGQTLIEAATKNHIPRSTLYMRAKALGIQLQACRNEYPVECMKGAIDAVIGGSSLQTASELFGIPKTVLWRRMQKEGYQVFRPELKRTYGSDKREAAVKALERGENLSKVAQEYQIPKTTLFRDKTRLIDQGKLPSSFWKKRKTENETVKRFRLEEAVAACKSGKMSQAAASVCYRIPKTTIWRRLQQDNSKNKRKIKSTGSMNASANTIDTDEFTFCEVTSGIPITYIDENSIPEDSVIILTTEDVEELSLENRAQIIVNSNVNQEFISNAESDSNYTVSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879877;
- 90% Identity
- iTF_00882861;
- 80% Identity
- iTF_00880621;