Basic Information

Insect: Leptopilina boulardi
Gene Symbol: -
Assembly: GCA_011634795.1
Location: PHTE01000670.1:162900-164975[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.11 12 7.0 2.9 1 23 390 412 390 412 0.97

2 9 1.6e-05 0.0017 19.1 0.5 3 23 449 469 448 469 0.98

3 9 0.00035 0.038 14.9 4.9 1 23 475 497 475 497 0.99

4 9 0.00076 0.081 13.8 0.1 3 23 505 526 503 526 0.90

5 9 0.08 8.6 7.5 3.3 1 23 533 556 533 556 0.98

6 9 0.0002 0.021 15.7 3.4 1 23 560 582 560 582 0.96

7 9 0.00053 0.057 14.3 0.3 1 23 588 610 588 610 0.98

8 9 3.7e-05 0.004 17.9 2.3 1 23 616 638 616 638 0.97

9 9 1.2e-06 0.00012 22.7 3.2 1 23 643 665 643 665 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.11	12	7.0	2.9	1	23	390	412	390	412	0.97
2	9	1.6e-05	0.0017	19.1	0.5	3	23	449	469	448	469	0.98
3	9	0.00035	0.038	14.9	4.9	1	23	475	497	475	497	0.99
4	9	0.00076	0.081	13.8	0.1	3	23	505	526	503	526	0.90
5	9	0.08	8.6	7.5	3.3	1	23	533	556	533	556	0.98
6	9	0.0002	0.021	15.7	3.4	1	23	560	582	560	582	0.96
7	9	0.00053	0.057	14.3	0.3	1	23	588	610	588	610	0.98
8	9	3.7e-05	0.004	17.9	2.3	1	23	616	638	616	638	0.97
9	9	1.2e-06	0.00012	22.7	3.2	1	23	643	665	643	665	0.97

Sequence Information

Coding Sequence: GATGAGCTGGACAAATCGGTCCCAGGCACATCGACAATTAACAACAATGATTCAGACAAAGATCTTAATCGTGCAAGAACACCACAACAATCATCACTACCATCACAATTGGATGAAGTACAAGAAATAACAATGGAAATTGATAAACATCATCATTTACATGATGAATTTCGTTGTAAATCAACAAttgatttacaaaatattgaaacgCCAGTTTTAACGACATTACAAAATGTGCCTTTCCCACaagaatttacaaattcaCAAGAAGTCCTTCATAATAGTCAAATTGTACACAACGCAAGTGTGCAacttaatagtaataataataataataataatcatcatcatcatctacagaatcatcatcatcagcagcagcagcagaaTCATCATCAGGAAATATTAAATCGCGATGGAATGAGAAcggaattaataattgaaacacGCGATCCACTTGATATTGATGAACGTGTTTTACAAACAAATGTTCTTCAAAGCGATTATCAAGATCTTCCAAATTCACCTGCAATACCAATAATTCGTAGTATTGAAAGATTAATGAGTgatgaaaattgtattgaatCGGGACAACAAGATGCATGTGTACGTTGGTTACGTGGACGTAATGaacttgaaattaaatgtacAAAAACAACTGATATTACAACAATAAATGataaagaacaaaattcaTTACAAAATGAACAAATGAATGGTCAACGAAATATGATACAAATTGCAACAggtacattaaataaattattaaatgttattgCCGAGACATGTGAAGTTGAAGTATCGGTACgtgaatcaataaataatgataatgataataatggtGGTGATATTAGTTTTCTCattgaattaagaaataaagaaacatcAACTGTTAGTGTATTGGCAAAAGTATTTCCCGATCAAGGCTCATGTTTATTAGATCCAAAAATAATGACACTATTAAAAGATCAAAATAATCATGAAATaagtgaattattaaaaataattgatgctaaaaatcaaaaaggtaaaacaaatattattaatgatgatgatgatgatacaACAGAAACATTAAGAAATCCAGAGGAATTATATCGTATGGACGGTGAAGAAATACATGTTGATGATAATGTTGAACAAATAACTGTTAATAATCAAATGAATTATGCATGTCGtttatgtcaaaaaatttatgaacgtCGTGATAAATGTACAGTACATGTTAAAACACATTTGGGTATTAAACAATATCATTGTATTGTTTGTCAAGCAAAATTTGTATGTAAATCAGATGTTATGAAACATATAAGATGTTCACATACAAATCCACGTCCAATATTATGTCCAAAATGTCCAAAACGTTttcgttcaaaatttgatttagcTGAACATACAAATGTTCATAAGGGCATTAAACCATATCGTTGTTCTGATTGTGATCAAACATATCATCATAAAGTATCATTACAAATGCATGTTAAATCACATTTACCACCACAAAATTTGGCATGTGAATATTGTGGTAAAGTATTTCCATATAGAACACGTTTATTAAGTCATGTTGGTAGTGTTCATATGAAAAATCGACGTAATTTTCGTTgtcatttttgttataatctTTATTCAAGTTTATCGGTATTAAATGATCATATTAAAACGCGTCATGCAACAACATTTACATGTGAAACatgtaataaaacatttaaagttGCATCAAAATATAAAGCGCATGTACATCAACATACAAATCCAAAACCATATGTATGTACTGTTTGTGATAATCGTTATGCGTCAAAggcatttttaaatgaacatttattaaaacatcaGGGTTTACGTAAACATGTTTGTCAAAAATGTGGAGCACGTTTTGCTCAAGCAAGCCATTTAGCTGCACATCGTCATGTGCATGGTGAAAAAACACATGTTTGTTCTGAATGTGGTAAGAAATTTAATCGACGTGACAATATGAAAGTGCATTTGAAgagacattttgaaaatgataaaaaaagtaataatagtaataatagtggTGGTATTAAACAAGaggaagaggaaaaaaatgaaaaatga
Protein Sequence: DELDKSVPGTSTINNNDSDKDLNRARTPQQSSLPSQLDEVQEITMEIDKHHHLHDEFRCKSTIDLQNIETPVLTTLQNVPFPQEFTNSQEVLHNSQIVHNASVQLNSNNNNNNNHHHHLQNHHHQQQQQNHHQEILNRDGMRTELIIETRDPLDIDERVLQTNVLQSDYQDLPNSPAIPIIRSIERLMSDENCIESGQQDACVRWLRGRNELEIKCTKTTDITTINDKEQNSLQNEQMNGQRNMIQIATGTLNKLLNVIAETCEVEVSVRESINNDNDNNGGDISFLIELRNKETSTVSVLAKVFPDQGSCLLDPKIMTLLKDQNNHEISELLKIIDAKNQKGKTNIINDDDDDTTETLRNPEELYRMDGEEIHVDDNVEQITVNNQMNYACRLCQKIYERRDKCTVHVKTHLGIKQYHCIVCQAKFVCKSDVMKHIRCSHTNPRPILCPKCPKRFRSKFDLAEHTNVHKGIKPYRCSDCDQTYHHKVSLQMHVKSHLPPQNLACEYCGKVFPYRTRLLSHVGSVHMKNRRNFRCHFCYNLYSSLSVLNDHIKTRHATTFTCETCNKTFKVASKYKAHVHQHTNPKPYVCTVCDNRYASKAFLNEHLLKHQGLRKHVCQKCGARFAQASHLAAHRHVHGEKTHVCSECGKKFNRRDNMKVHLKRHFENDKKSNNSNNSGGIKQEEEEKNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00880017;
90% Identity: iTF_00880017;
80% Identity: -