Lbou011230.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopilina boulardi
Gene Symbol
-
Assembly
GCA_011634795.1
Location
PHTE01000730.1:130292-132148[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0014 0.15 13.0 0.1 1 23 199 222 199 222 0.97
2 10 3.8e-06 0.00041 21.1 0.5 1 23 228 250 228 250 0.99
3 10 1e-06 0.00011 22.8 0.5 1 23 256 278 256 278 0.99
4 10 0.023 2.5 9.1 4.1 1 23 284 306 284 306 0.98
5 10 4.6e-06 0.00049 20.8 2.0 1 20 312 331 312 335 0.95
6 10 0.56 61 4.8 1.8 2 23 342 361 341 361 0.92
7 10 7.6e-07 8.1e-05 23.3 0.6 3 23 369 389 368 389 0.99
8 10 0.00011 0.012 16.5 1.4 1 23 395 417 395 417 0.98
9 10 0.00086 0.093 13.6 2.9 1 21 423 443 423 446 0.96
10 10 0.47 50 5.0 4.4 1 21 452 472 452 473 0.95

Sequence Information

Coding Sequence
ATGACAAATGAACAGAATGATGTCGGACAAATTTCCGAACAATCACAAGAGGAAATAGTGCAATTAACTGAATTATTACCAGTTGAACAATATCGAATACAAGAATCATCGAATTATAACGATTCAGGTGCAACGGATGCTTTAAAAGCATTAAGAAGTTTCTCACAAAATGaacaggaatttttttatcaaaaatataatgaattggAATCATTGAATGGAACCGAGGAATATGGTGATAAAATATGGAAtagtgatgatgatgatgaagaagaagaattacttgagaaaacaaatacaaaaagagggaaaaagatgagaaatataaaaaagactGACGAAAAGAGTAATAAAGAAGAGGAGGAAATAGTATTGAGTGAGgattcaaattttccaaatgagaCAATTGAAGATgaaatatattcatttcaaCATGATTCAGAAGTTGAGAATTTGGAGAAgaaaattggttcaaataatttgagaaagaaaattgatgCAATTATACAAGCAAATATTCTTTTAGAacaggaaaatgaaaataataatgtgatGCAAGAGGCTAAAAATCAGGATAATAaggaggtaaaaaaatatgtttgtgtTATTTGTAATTCACAATTTAAAGGTAGTGGTGGTTTGAGAAATCATTATAAAGTTGCACATGCAACTGGACCACTTTATAAATGTGATGAATGTGGTAAAGAATTTCCATTAAAggaaagattaaaattacatgTAAGAACACACACTGGATTTAAACCCTATAAATGTTTGGAATGTGATAAGAGTTTTGCAAGAGGTGGTCAATTGGTGCAACATCGTCGAACACATAGTCAAGTGAAACCCTATCATTGTTCATTGTGTTCGGGTACATTTACATGCGCTGCCAATTTAACATTGCACATGAAACGGCATAATGGACAAAAAGAtcataaatgtgaaatttgtGGACGTGGTTTTGTACGTAGGGatgcattaaaaaaacacatggAGTGTCTACATCATGAtgttaaatcatttttgtgtgttatttgtaataaaacattaaaggGTCATTTACCACAGCATATGAGAACGCATGCTCAAGATAGGCCACATGGCTGTGGAACTTGTGGTCAAAGATTTGCCCAAAAATCACAATTGACAGTACATCAACGAACACATTCGGGTCAAAGGCCATTTAGATGTCTTGTTTGTTGGCAGGCATTTGCACATTCAACAGCATTGAAATTACATACACGACGACACACTGGTGAGAGGCCATTTAAATGTGAGGAATGTAATGCTGGTTTTACTCAATTACCACATTGGAAAAAACATATGAAATGTATTCATGGAAGAAATGAACCCTATTGTTGTCGTAGATGTAAGAGTTTTTTTCGTATTAAAAGTGAATTGGAGAGTCAtcagaaattttgtaaattaacgggaaaaattaatgcaactaataatgatgataatgataaaaatattgataacaatgatgatgatgatgatgatgatgataataatgatgatcaGGTTGAAGTATTTAGTGATCGTATTAAATATAGAGTGATgccaattgaaaaaatgcgATTACTATTGGCGGTGTTGTTAAAGAGAATTTCAAAGCAGGAAAAATTGGATGAACTTGGATTTGGTAAAAGATTAATTGATGAAGTTCTTCATGATTCATTAATATCGGCGGGTAAAGTGCCAGTTAAAAGGAATAATAGTACATCGGAATTTGATTGTTTAAAGAAGaatgttgaaatatttttggaatggACAGTGCCAAAAAGTCATTgggcaaaatttaaaaaaatgaaaaaaacaccTGAAGAAATTCTTGAAACTCTCACTACTTcgtaa
Protein Sequence
MTNEQNDVGQISEQSQEEIVQLTELLPVEQYRIQESSNYNDSGATDALKALRSFSQNEQEFFYQKYNELESLNGTEEYGDKIWNSDDDDEEEELLEKTNTKRGKKMRNIKKTDEKSNKEEEEIVLSEDSNFPNETIEDEIYSFQHDSEVENLEKKIGSNNLRKKIDAIIQANILLEQENENNNVMQEAKNQDNKEVKKYVCVICNSQFKGSGGLRNHYKVAHATGPLYKCDECGKEFPLKERLKLHVRTHTGFKPYKCLECDKSFARGGQLVQHRRTHSQVKPYHCSLCSGTFTCAANLTLHMKRHNGQKDHKCEICGRGFVRRDALKKHMECLHHDVKSFLCVICNKTLKGHLPQHMRTHAQDRPHGCGTCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCEECNAGFTQLPHWKKHMKCIHGRNEPYCCRRCKSFFRIKSELESHQKFCKLTGKINATNNDDNDKNIDNNDDDDDDDDNNDDQVEVFSDRIKYRVMPIEKMRLLLAVLLKRISKQEKLDELGFGKRLIDEVLHDSLISAGKVPVKRNNSTSEFDCLKKNVEIFLEWTVPKSHWAKFKKMKKTPEEILETLTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-