Lbou022304.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000587.1:54095-58735[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.49 53 5.0 0.1 6 21 291 306 288 307 0.90 2 13 0.0052 0.56 11.2 0.5 1 19 313 331 313 336 0.95 3 13 0.00012 0.013 16.4 3.7 2 23 349 371 348 371 0.96 4 13 0.035 3.8 8.6 0.2 3 23 384 404 384 404 0.95 5 13 1.3e-07 1.4e-05 25.6 1.0 3 23 443 463 441 463 0.97 6 13 0.015 1.6 9.7 1.0 1 23 468 491 468 491 0.95 7 13 0.16 17 6.5 0.2 2 23 562 583 561 583 0.96 8 13 0.00017 0.018 15.9 4.2 1 23 592 614 592 614 0.96 9 13 1.9e-06 0.0002 22.0 1.5 1 23 622 644 622 644 0.98 10 13 0.16 17 6.5 4.8 1 21 650 670 650 671 0.94 11 13 5.9e-05 0.0063 17.3 2.4 1 23 701 723 701 723 0.99 12 13 0.17 18 6.4 0.0 1 23 786 809 786 809 0.97 13 13 1.7e-06 0.00018 22.1 4.7 1 23 814 837 814 837 0.96
Sequence Information
- Coding Sequence
- ATGAAAACTTTGAACTATATTGCATTTTATTGTGAAAAGAAagcattattttttcgaaaaaaaaaaaaaatgacagctGTTAATAATTGGGAAAATACATGCAGACTTTGTTCTGAAGTGAAGACTGAAATGCTCCCAATTTTTGGTATTGAAGGCATACAACGAAAAGTAGCTCAGAAATTACGAGCTTGTTTGCCTGTTCTCGTTTACAAGACTGATCCTTTGCCGAAGCAAATTTGCCAATTTTGCGCCGCAAGGCTCGATGATGCTTTTGAATTTCGTGAATATTgcttaaatgtttataaaacaatGCACACTAAACTTTtggtacttaaaaatttggagtctgtacaaatttttcttaatgccATGCAAAATTCACCAGATCCTTGTCaggtacaattgtgtaaagaaaaatgtcgAGCACCACCACCTCCTTTAGTTCCATTACCAGCAACACTGCCAATAGAAAGTACAACTCCTTTAATTAATGCATCTGAATTATTACAATTGAATCACAATACAAGGGAACCACTTCCTGAATTGCCGTGCGAAGTGCAAATTAAAGAAGAACCTTTAGATACATTACATCGAAATGATTCTGATTTAttggatataaataaaagaagtttattAATCTCAGGAATGGGAAaaagaacaaatatttttacaaatgattatgaaaaatcatatgatgatgatgatgtcaatgatgatgatgatgatgataataatgaggaaaatattgatgaaaacGATAAACCACGAACAAGTATATTGGAACAAGTACTCAAAGGCAATATAACATTAAGTGATcgtaaagaattaaaaacaaaatcaggACTTAGCTCTAAATGGTGGTGTGCGccttgtaataattattatagaacaAAGGAGGGTTTGATAAAACATATGCAAGTGTTTTGCCCGCGAAGATACACATGCAGAAAGTGTTCTCGTGTTTTTTACACTGTTGAGGATTTAGCAAAACACGATGGCActgatcatttaaaaattacattagaTTTCGATGAAATAGTTACCAAATGCCATCAATGTGATCGTGAATTTGTTAGTTGGGAAATGCTCAGGCATCACAGACTTCGTGATCATGTTGCCGAAGATATTGACGTTGGAACAAGTACATGGTGTCCACCTTGTAATAGattttttcCTACAATGGAAACTTATCAAAATCATATACAATTACATCAATTGGATACAATGACAAGGCTACCAATAAGTTCATTACCTTCAGTTTCACAAGAAAATCATACACgagaaattagaaaagaaaattttaacgatAGCGTTAAATCATTAGCTTGTCCCACATGCGGCAAggTTTGTACACAGCAAAGTGCATTGTCAAATCATATGCGAACGCACGAGCCAAAGAAACATCAATGCGATATTTGTGGAAGATTTTTTGGTCTCTACATAAGACTCGCAACGCACAAGATGACTGAACATAATCAGGGAATGATGCCTGCAATGACAAGTGTCGAACAGGAGGAAGCATTAAATGCCGAAAGAGAGGCAAGAGAAGCTAGAGAAGCTAGATCACGTGGTAAAACAAGATCTTACGATGagatTATGATTGAAGAAAATGACTGTTCAATAAATGATAGACCAGTGAAACGAAAAGTTGTTCTTAATTCAAGCACGATTAAAAATGCTGTACGTTGTGGTATTTGTTTGCAATGGTTTAATAACCGCACAGAAATGATTGTTCATTTACAAACGCACTCTGATTCTTATAAACCTAAAAGCTTTTGCTGTAAAATGTgtacaaaatcttttaaagaaaagtggCAATTAACTAGGCATGAAgcTTCTCATAATCGTACAACTATTACAACTTACACATGTACAGTTTGTAATGAAGTATTTACAGACAAGTCATCATATAAAACTCATCAGGCGAAacattcaattgaaaaaacttttcactgtgcaaaatgtaataaaattttctttaaagaattttcattaatgacACATCAGTGTAATGTGAAAccattatttaataagaaaaatacaattccaaagaatttgcAAAGAAGTAATAATTCTGCCTTATTTGGTggttctaaaaaatataaatgctcGAAATGTAGTGCAACATTTACCAATTCACAATCGAGAAATTCTCATATGAGAGTACATTCAGAAGCTCAtcttatgaatcaaGTTCGTAAGGCAGCTTTGAAAAAAGAAGCAGGAAAAATGCCAAAATTAAGACCAGAAACCGGCGCTTGTACTTCTGTGCCTCGTATCGAACAAAATACAGAGGCCGTTGATGTTAATCCACCGGCACCAGTTAAAAGGACTCTCATTAAAACAGCTGGCGGaTATCGTTGCGGTGTGTGTCAATCACCGTTCGTACTACGTGAATTAGCTGTTGCACATCTTCGTTCTGCTCATCCATTAATGCCATATCAGTGTCCTTATTGTAAAAAACGCTTCACAACACAGTACACGTTTACTCATCACATAAAAGCAGATCATCCCGATGAAtcggaaaattga
- Protein Sequence
- MKTLNYIAFYCEKKALFFRKKKKMTAVNNWENTCRLCSEVKTEMLPIFGIEGIQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDAFEFREYCLNVYKTMHTKLLVLKNLESVQIFLNAMQNSPDPCQVQLCKEKCRAPPPPLVPLPATLPIESTTPLINASELLQLNHNTREPLPELPCEVQIKEEPLDTLHRNDSDLLDINKRSLLISGMGKRTNIFTNDYEKSYDDDDVNDDDDDDNNEENIDENDKPRTSILEQVLKGNITLSDRKELKTKSGLSSKWWCAPCNNYYRTKEGLIKHMQVFCPRRYTCRKCSRVFYTVEDLAKHDGTDHLKITLDFDEIVTKCHQCDREFVSWEMLRHHRLRDHVAEDIDVGTSTWCPPCNRFFPTMETYQNHIQLHQLDTMTRLPISSLPSVSQENHTREIRKENFNDSVKSLACPTCGKVCTQQSALSNHMRTHEPKKHQCDICGRFFGLYIRLATHKMTEHNQGMMPAMTSVEQEEALNAEREAREAREARSRGKTRSYDEIMIEENDCSINDRPVKRKVVLNSSTIKNAVRCGICLQWFNNRTEMIVHLQTHSDSYKPKSFCCKMCTKSFKEKWQLTRHEASHNRTTITTYTCTVCNEVFTDKSSYKTHQAKHSIEKTFHCAKCNKIFFKEFSLMTHQCNVKPLFNKKNTIPKNLQRSNNSALFGGSKKYKCSKCSATFTNSQSRNSHMRVHSEAHLMNQVRKAALKKEAGKMPKLRPETGACTSVPRIEQNTEAVDVNPPAPVKRTLIKTAGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDESEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880695;
- 90% Identity
- -
- 80% Identity
- -