Lbou008072.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01001480.1:32763-45286[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 2.2e+02 3.0 4.7 2 23 282 304 282 304 0.96 2 20 0.44 47 5.1 3.0 1 23 355 377 355 377 0.97 3 20 0.13 14 6.7 0.2 1 23 426 448 426 448 0.97 4 20 0.00096 0.1 13.5 0.3 1 20 478 497 478 499 0.94 5 20 9.4 1e+03 0.9 1.3 1 23 511 534 511 534 0.80 6 20 0.021 2.3 9.3 0.9 2 23 540 561 539 561 0.94 7 20 0.0011 0.12 13.3 0.2 1 23 571 593 571 593 0.97 8 20 0.00047 0.05 14.5 0.1 1 23 599 621 599 621 0.97 9 20 2.2e-07 2.4e-05 24.9 0.8 2 23 646 668 645 668 0.96 10 20 0.017 1.8 9.6 0.6 5 23 677 696 676 696 0.96 11 20 7.8e-05 0.0084 16.9 0.5 2 23 704 725 703 726 0.94 12 20 2.1e-05 0.0022 18.7 0.3 1 23 733 755 733 755 0.93 13 20 0.085 9.1 7.4 0.1 2 19 790 807 789 808 0.95 14 20 0.13 14 6.8 2.0 1 23 838 860 838 860 0.95 15 20 0.0051 0.55 11.2 0.1 3 20 876 893 874 895 0.91 16 20 0.22 24 6.1 0.9 2 23 912 934 911 934 0.90 17 20 7.6e-07 8.2e-05 23.3 1.2 2 23 944 966 943 966 0.96 18 20 0.017 1.8 9.6 1.3 1 23 972 996 972 996 0.94 19 20 0.85 91 4.2 4.3 1 23 1001 1024 1001 1024 0.91 20 20 0.51 55 4.9 0.6 2 23 1056 1078 1055 1078 0.93
Sequence Information
- Coding Sequence
- atgaaggaTATCGAAGAATTGCAAGGCCTAGAAAGTGCATGTAGACTTTGTTTAACAACCGAAGAAACAAGATCTTCCATTTTCGGTGCTGCTTACAACGTAGAACCACTAAttgagaaaatagaaaattgtttatctcTTCAAatttcTCAAGATGATAAATTATCGACTTTAATTTGCATCACTTGCGTTAATAAAGTCAGTCAATGGCATCAATACAAAAAAGAGTGTCTTCAATCTCAGGACAAATTATCGGCATGGCTCGCAAAACAATCGGAACCACTTCcgGTTGTAACCGTAAAGAAAGAATTAGAAGAAGATTCCATTGAACATTCACATTTagaaaagATTACAGAGAAAAATGCCGAATTAGACAAGAATAATGAGAATTCATTGGAAATAATTGGAAATACATCGggaaatttggaaataattgaaaatggagAAACAGAACAAGAACAAGAAATGGaaacagaaattgaaaatatggaaataacgacaaatattcaagaaataaataatgaaaataatagtgaaaaacaaattaatcgCGAATCAATAAAACGACGATTATCAAAAGATTTTGGTAATGAGGCAAAACGTTTTAATCCATTGCCAATAAAAACCGAGCCAATTGACGATTCATTGAATATTGAGGAAAATCatataaatacagaaaatatggaaaatacagaaaatacagaaaatacagaaaatttagaaaattcggtaaatttagaaataaaagaaataaaacaacaaaaagtttcatcattaaagggaaaaaagaaaataagacgTGGACCACATACACATTTTCGCGGTGCAAGAATATTTAAACGTAAATGTCTtcattgtcaaataaatttacattcaaaaacATCGTATGCAAAGCATATGGCAcgttttcattcaatttcaaatttagaaaatgaaggagaagaggaagaagaggaggaggaggaagaAATGATTGAAGATGTTGAAGAGGAATTGGAAAATCTTGAAGAGGACGCACCATTAACGCCAGtacaacaaaatataataagtcaatttaaaacatttaccTGTTATTCATGTGAGGAATCATTTAATGATTGTTTAACAACTTTAAATCATATTCGTCAACATATGCCCGATTTACGTGCGTTTACATGCGTTGCTTGTTTAACGGAATTTGGCAATGAAAATGCATATAAAAAACAttgtgaaatttcatttgaatgcGCAATGAAAATTGCATTGGTTATACCAATTCAAGGAACGGAGAAATATTTCACTTGTAATATGTGTACAATTGCAATGGGAAATCGAAAGGAATTATTGAGTCATTTAGCTAAACATTCGGATAAACAATATGAGGAATTAATGTCACCGCCACCGAAATTAACGACTTCACTTCCCTATGGACAGGGTGATCCTGCCTATAATCATGAATGTGATTTATGTGGAATGATCTATCGATATAAATCAAATATGATAAAACATCGTGAATTATGCGCGAGTCTACAACCAGAGGGTAGAACATCGTATAAATGTATTGATTGTGGAATGACatttttggtatttaataaatttcacagTCACGTGATGATTGaacataagaaaaaagaattaaaatgtcCAAAATGTGCCGCTAAATTTCGTTCACCAGGTGATTATCTCACGCATCATGAATTTCAtcgtaagaaattttttgaggagaaaaaattttcttgcaaTCTTTGTAATGGAATATTCGCTACACGTGGTGAATTAACAGAACATAGGAATTTACAtcttaaagtgaaaatttattcctgTGCTATTTGTCGTTCAATGTTTAGTAGCGCTGGTGCTCTCGAAATACACATGAAGGATCATGGAATTGATGATCCAAGCGAAAGAACAGCAAATACTTCATGCTTGGAGTAtggaaataaaacaaaaaataccgAATGTCATGAATgtgggaaaatattttccaatgttGCAAATTTAAAACGCCACATACGCAATGCTCAtggtgaaaatgaaaaacttattTGTGATTGTaaacgtatttttaaaaataaagaatcctATGACGAGCATCAACGTGTTGCGCACAATTTGGAAAAAACTGTTCTCACATGTTCTGAATGTCCAAAAACATTTGTATTTCAAGCGAATTTAGATTTACACATAATTAATCATCATGCCAAAGTAAAAGTACCACATGAATGTGAAATTTGTGGTAAAACATTTGCTGAGGAATcatcattaaaaatacatcGCGGCTGGCATAATCGCGCTAATTCAAGATTTAGTCTCGATAATCAAAATACAATGGCAAAACCAGCAAAGGCGAGAAAATCATTTCCAATGATAAATCCAATGATACAATTACAATGTCAAGTTTGTGATGATAAATTCAATGACGTTGGTGATCTTCGTAAACACGTTTGGGATGTTCATTGTGCAAGAACGGCAAAAACAGAAtcaccatcatcatcatcatcatcattattattattacaagaagaagagaaatttcattgtgaaatttgtgataaatattatagttCAGGAAAAATATTAGCAAggcataaaaaattacataaacaaatgaatatgcaaaaatttacaataggaaaaaaaattatttgtcatcCATGTGGAAGAACATTTACAGCTGAATCGGCATTAAAACGTCACAGAGCAATTTCACctgaatgtttatttaaaagaaatgaaacaatgaaaaaaccaGTAACTTGTCATAtttgtaaaacaatatttccAAATATGAGTATATTATATCAACATAAACAATTAATgcataaagaaaatgataaaaatttagaatctaaatgtaatatttgtggtaaacaatttacaaatatttcaaatttaaaacaacatatttcaatgaaacataaaaattcaatggaaCATCCATGTACGGTGATTAATTGTAATATgatattttcaactttacaTGCATTAAAAAGTCATGAATTACAACATTCAAATATGATTTATAGTTGTACATTgtgtgaaaaacatttttttcatcggGGAATAATGGAGaaacatatttataattcgcatagaattgtttataaatcaATTGGCGATGATAaggattcattatttaaggAAACTGATCTCACATCATATAATGTTAGAGGTGCAACTGGAACTGTTTGTCCaagatgtaaaattaaatatccaaATATTAAGGCAATGAAGAtacattatttcaaatttcatgaGACGCAACCTTGA
- Protein Sequence
- MKDIEELQGLESACRLCLTTEETRSSIFGAAYNVEPLIEKIENCLSLQISQDDKLSTLICITCVNKVSQWHQYKKECLQSQDKLSAWLAKQSEPLPVVTVKKELEEDSIEHSHLEKITEKNAELDKNNENSLEIIGNTSGNLEIIENGETEQEQEMETEIENMEITTNIQEINNENNSEKQINRESIKRRLSKDFGNEAKRFNPLPIKTEPIDDSLNIEENHINTENMENTENTENTENLENSVNLEIKEIKQQKVSSLKGKKKIRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSISNLENEGEEEEEEEEEEMIEDVEEELENLEEDAPLTPVQQNIISQFKTFTCYSCEESFNDCLTTLNHIRQHMPDLRAFTCVACLTEFGNENAYKKHCEISFECAMKIALVIPIQGTEKYFTCNMCTIAMGNRKELLSHLAKHSDKQYEELMSPPPKLTTSLPYGQGDPAYNHECDLCGMIYRYKSNMIKHRELCASLQPEGRTSYKCIDCGMTFLVFNKFHSHVMIEHKKKELKCPKCAAKFRSPGDYLTHHEFHRKKFFEEKKFSCNLCNGIFATRGELTEHRNLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIDDPSERTANTSCLEYGNKTKNTECHECGKIFSNVANLKRHIRNAHGENEKLICDCKRIFKNKESYDEHQRVAHNLEKTVLTCSECPKTFVFQANLDLHIINHHAKVKVPHECEICGKTFAEESSLKIHRGWHNRANSRFSLDNQNTMAKPAKARKSFPMINPMIQLQCQVCDDKFNDVGDLRKHVWDVHCARTAKTESPSSSSSSLLLLQEEEKFHCEICDKYYSSGKILARHKKLHKQMNMQKFTIGKKIICHPCGRTFTAESALKRHRAISPECLFKRNETMKKPVTCHICKTIFPNMSILYQHKQLMHKENDKNLESKCNICGKQFTNISNLKQHISMKHKNSMEHPCTVINCNMIFSTLHALKSHELQHSNMIYSCTLCEKHFFHRGIMEKHIYNSHRIVYKSIGDDKDSLFKETDLTSYNVRGATGTVCPRCKIKYPNIKAMKIHYFKFHETQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -