Lbou022298.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000587.1:185770-191209[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.8 1.9e+02 3.2 3.8 2 23 248 269 247 269 0.82 2 17 0.08 8.6 7.5 0.5 1 23 275 298 275 298 0.92 3 17 0.041 4.4 8.4 3.1 1 23 310 332 310 332 0.92 4 17 0.072 7.8 7.6 1.4 2 23 340 362 339 362 0.91 5 17 1.2e-06 0.00013 22.6 2.4 1 23 368 390 368 390 0.98 6 17 3.1e-05 0.0033 18.2 1.3 1 23 396 418 396 418 0.97 7 17 2.5e-06 0.00027 21.6 0.7 1 23 424 446 424 446 0.98 8 17 0.065 7 7.7 3.0 1 23 493 515 493 515 0.95 9 17 0.002 0.21 12.5 0.2 1 23 521 543 521 543 0.97 10 17 0.00014 0.015 16.2 1.8 1 22 563 584 563 584 0.95 11 17 0.014 1.5 9.8 0.3 2 22 592 612 591 612 0.93 12 17 0.034 3.6 8.6 1.7 1 23 619 642 619 642 0.93 13 17 3.7e-08 4e-06 27.4 2.4 1 23 653 675 653 675 0.99 14 17 0.12 13 6.9 1.2 1 23 681 703 681 703 0.95 15 17 1.6e-05 0.0017 19.1 3.6 1 23 709 731 709 731 0.98 16 17 0.0012 0.13 13.2 1.1 1 23 737 759 737 759 0.97 17 17 3.3e-07 3.6e-05 24.4 0.9 1 23 765 788 765 788 0.98
Sequence Information
- Coding Sequence
- ATGAATATTTTAGGAAATGACTTTGATGATGATCAATACGTTACGAAgagtaatgaaaatttcagcAATGCTGATttcgaaaatgaaatattgcaATTTACTGACCtacaagaaaaaacaaatgattaCGAAACAATTTCCTTTTCATCAGAATTAGccagtaaagaaacaattttcgaaACTTGCCTCGATGGAAAATATGATGAAATTATTGTCAATGATCAATTATTGGATGATTTTGTGATATATGAAAGTATTCAAgattctttaatttcaaaagaaatacaatcactgtccaatgaaaataatgttaatttcaaCGAAATGGAAGTTATTGGAGAATTTGAATTGCCACAAACAAtgaatttacataataaaaaaatacttgacaaaaatataaatgagaatgaaattttattatgtcgACTTTGTGCCCAAAAAACCGAGAGtatgatttacatttttcaatattctacaaatcaacaaaatattgctgaaaaaattaacaactgTCTACCAATTACTgtcACAGAAactgataaattttcaaaaacaatttgtcaTCTTTGCTTCGAAAAACTGGAATTTGTTAACAATTTCTACAAAACTGTATCAGAAGCTGaggctaattttaaaaaaccaacaGATTGTTCTGAAACATCGATCAAtgaggaaaatgaaaataattctgaaGAAGAAAATCATCCATCAACAAAAGACAAAACACAAATAAATGACATTAGTTGTCGAAtttgtgaaagaaaattttcaacacaaagaaaatgttttcttcATTCCACCATGCATACATcgtcaaattattttccctGTTCACTTTGTGATAATAATTCTACAACTTTAGACGAATGGAAAAAACATTACACTGAACAACATAATggaagaattaatgaaagaatGCCAGCCAAAtatgaatgtaaaatttgtaaaaaaaaattcatcaccATAAATCgtttgaattttcatcaaaaatttcatgaattaAACGCTAAAGCTTGCTATTGTGATAAATGtgataaatttctttcatcaGAATCGGTGCTCTATCAACATTCAATAATGGTACATCAACAAACAAGAGAATTTTGTTGTGATATTTGTGGAATTCAATTTAGATCTCAGAGCCAATTGGCAACGCATCAACGTAAACACAACAACGAAAGACCCTATGAGTGTAAAATTTGCCTcaaacaatttaattcaatggACAATTTACGACGTCATGAAAAACTTCATCTACCAACAAAACCATTTCAGTGTAATAAATGTGATAAGGCTTTTGATCGTATTAACAGTCTCAATAAACATTTGCTAATACATCAAATAgctgaaaaatcaaaaattttatgccaAATCTGCAATGGTTGTAagcaaatattatttgatgatTCCGAATctcatattcaaaattgtaatgaagaatttccatttatcgAACACAAACAACTTGACACTGTCTACAGATGTGAATTTTGTCAACAATGTTACACATCAATTGAATCGGTAAAAAATCATTCCACAATTCATTCTGGATCATGTCCCTATGTATGTACAATTTGTCAAGTGACTTTTGCAACTTACAATCAGATAATAGCTCATAAAAAAGCCCACATTAGAAAATCAAATCAGAAAACAATTgaagataaagaaaataaagtgacaaaattatttttttgtgaaaattgtgATAAGACATTTAGCAATTTTACCAATATGAATGTACATCGAAAGACATGTATTAATGGTAGTACACTGATTTGTCCATCGTGTGACATTCTTTTCGTGAGTAAACAAGAATTCACGAAACACAAAAGAAGACgagaaattgatgaaaaatttaattgtgaaCAATGCAAGATTTCATTTGGTAATAAATGTGgttttgaaattcataaaacaattattcacatgggaaatgaaaggaagaatagaaatttattcacTTGCTCTGACTGTGGAAAGGCATTTCAGcaaaaagCTCATCTAAATAATCACATGAGAAGTCATACTGGCGAGAAACCATTTGCTTGTGATTattgtatgaaaaaattcagtttcaaAGCCGATAGAGATaatcatgaaaaaattcaCAGTTTAGaacgtttatttaaatgtaaaatgtgtgaaaaaagttttaaaaattctgcacgACTACGTGAGCATATGATACATCATTCTGATATTCGTCCTTACAAATGTGATTATTGCGATCAAGCATTTAAAAAGACGAATGCAAGAAAAGTTCATACACTTATTCATACAGGTGAGAAGCCATATCAATGTGATATTTGTGGTATTTCATTTCGAAGAACGGgcgatttaaataaacacaaaaaaactcaacacaaaattctaattgaaaaataa
- Protein Sequence
- MNILGNDFDDDQYVTKSNENFSNADFENEILQFTDLQEKTNDYETISFSSELASKETIFETCLDGKYDEIIVNDQLLDDFVIYESIQDSLISKEIQSLSNENNVNFNEMEVIGEFELPQTMNLHNKKILDKNINENEILLCRLCAQKTESMIYIFQYSTNQQNIAEKINNCLPITVTETDKFSKTICHLCFEKLEFVNNFYKTVSEAEANFKKPTDCSETSINEENENNSEEENHPSTKDKTQINDISCRICERKFSTQRKCFLHSTMHTSSNYFPCSLCDNNSTTLDEWKKHYTEQHNGRINERMPAKYECKICKKKFITINRLNFHQKFHELNAKACYCDKCDKFLSSESVLYQHSIMVHQQTREFCCDICGIQFRSQSQLATHQRKHNNERPYECKICLKQFNSMDNLRRHEKLHLPTKPFQCNKCDKAFDRINSLNKHLLIHQIAEKSKILCQICNGCKQILFDDSESHIQNCNEEFPFIEHKQLDTVYRCEFCQQCYTSIESVKNHSTIHSGSCPYVCTICQVTFATYNQIIAHKKAHIRKSNQKTIEDKENKVTKLFFCENCDKTFSNFTNMNVHRKTCINGSTLICPSCDILFVSKQEFTKHKRRREIDEKFNCEQCKISFGNKCGFEIHKTIIHMGNERKNRNLFTCSDCGKAFQQKAHLNNHMRSHTGEKPFACDYCMKKFSFKADRDNHEKIHSLERLFKCKMCEKSFKNSARLREHMIHHSDIRPYKCDYCDQAFKKTNARKVHTLIHTGEKPYQCDICGISFRRTGDLNKHKKTQHKILIEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -