Lbou000571.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000062.1:237208-246664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.88 95 4.2 1.5 3 22 124 142 124 142 0.93 2 14 0.00091 0.098 13.6 0.2 1 20 148 167 148 168 0.95 3 14 0.0011 0.12 13.3 1.6 1 23 176 199 176 199 0.92 4 14 8.9e-06 0.00096 19.9 0.4 1 23 205 227 205 227 0.98 5 14 1.1e-06 0.00011 22.8 0.4 1 23 378 400 378 400 0.99 6 14 0.00021 0.023 15.6 0.6 2 22 410 430 409 430 0.95 7 14 0.0003 0.033 15.1 2.6 1 20 452 471 452 474 0.92 8 14 0.014 1.5 9.8 1.7 1 23 479 502 479 502 0.91 9 14 1.8e-06 0.0002 22.1 0.2 1 23 508 530 508 530 0.98 10 14 0.0005 0.054 14.4 3.1 1 23 537 559 537 559 0.99 11 14 0.00036 0.038 14.9 0.4 3 23 567 587 565 587 0.97 12 14 0.00039 0.042 14.7 0.3 1 23 593 616 593 616 0.96 13 14 2.1 2.2e+02 3.0 0.6 1 23 630 652 630 652 0.88 14 14 0.0058 0.62 11.0 0.1 2 23 887 908 886 908 0.96
Sequence Information
- Coding Sequence
- atggagTCCCATGAAGAAGAATACGTTACATTTCCACTTTCTAATGTACACGATGGTTTACAACAGAATGTTATTTCCCATGAGGAAATATGCGAACCTGTCGTTGAGGAATGTGTTctcgatgatgatgatttaaCAGAAGTTTCAGTGAATGAGGCAAATTCATCAAGTATCACCGAGGCACACGTGGCGGtgacaattttaaatgatgGCCGCTCTGATGAGGATGACGATGGCAGTAATATTTATCCAGTTTATATCAAGGAGGAACATCAATATACATCGGGTGACGATGAATCGATGGCTGTTGAGGCACTTCGTCAACTTGGTGGCAtgtatccaaattttaatgatgaaaaaaaaattggttgctCCAATTGTTCGAATACATTTACACAGgctgaatttgaaaaacatcATCAAACATGTTTACCcgataaattttcatgtaGCACATGTGGCGAGAaatttgagagaaaaattgatttagtcAATCATACAGTTTGCCATCAGGTCGATAGACCACATGCATGTCGAACTTgtggtaatttatttaaatcaaaatcattATTGCAAGCGCACATGACGGAATATCATCAAATTGAAAGACCACATAAATGTGCAATTTGTGGCGCTGATTTTATGAGACCATCGAGTTTATCGAATCATATGAAAATTCACACATACGTTGCTGGTCGTGCAATTATGCAAACTCAGGAGAATAATGTTGCACAAAGTTCTGAATCATTTAGAAAATGGTCCgataataatgttaatgaaACACAACAAAGTGTCTCGGTACCATCGTCATCGGtgcaaattattcaaaattatgatGTCTCACAAGTTCAATGGTCAGTTCCTGGTTATACATTTGCAAATGAGCAAGTTGTTGGTTCTCTTGGAAATCAGGATAAACTTGATACTTTACAAgaatTCACAGTTATGCCAAACGGAGAAGTCACACAATTTGAATACGCGGCACAAACTGAAATTGCTAATCAAATTGGAGATTATAATTTGtcgttaaattcattttgctCATCTGATGCAATGGTAAAAGTTGAAAGTCTATCATTTAACGAcaatagaagaaattttaacgaagtggaagtaattgaaaataaagcgTACACATGCAATCAATGTGGTGTGAGTTTTAGTCGACCAAATGCCTTGACATCACATGAGAAAACACATAATGCCAAAACATGGGCGACGCCAATTGAATGCAAATATTGTGACAAACAATTTCAAGATGAAAATCATTTAGCCACACATCAACAAACATGTGCAAAGAGAATAATGCAAAATTGCAATGAACAAGGTTTGCCAAATAGTAGATGGGGTAAACACGCTTGCTCCGAGTGTGGCAAAAAATTCACCACTAAACAGAAAATGTTTAGGCATCAATGGATTcatagAAAGAAGACACATTGTTGTGAAGTTTGTGGAACACAATTCGAGAAACAAAATCAATTAGATGAACACAGACTTGCCGCTCATCCAGGTGATTCGCCTTTTACATGCAACGAATGTGGCAAAAGTTTTGTCTCACGACAAGGTCTTTGGGAGCATGGACGTATGCACGCCGGTAGTCCTGCTCATTTTCAATGTGATGCATGCTCAAAAACATTCTCATCACGTCAAGGTTACTTAATTCATCATCGTACACATACAGGTGAACGACCTTAtggttgtaaattttgttggaAAGCATTTCGCGACGGTGGCACTCTACGTAAACACGAGCGTATTCATACAGGTGAGAGACCCCACGTTTGTCCACTTTGTACGCGTGcttttaatcaaaaagttGTATTACGCGAACACGTACGTTGGGTTCATGCGGCCggtaaaaatgaaactggAATCAGTGGACCGCCATTTCCATGTCCACTTTGTGGTTCATTGAATCAAGATCGCGATGAACTTTGTGCGCACATTGTTAAACATTCGGATCAAATGATTGCCGAGGCCAAGGCAAAAACACTCGCCAATAATAATGCTCCAAAATCATCAACAACATCATCAACAGCAAAATCgtcaaagaagaaaaaatcagGCTCAACATCGAAAATACAAGAGATACATATGATTAGTAATACTGAACAAAATGAGGCACTATTGTCAATAACTGATTCATCAATGAAATCGGATGATTCACAAATTGTCGATGGACAAATTGAGATACCATATAGGGAAATTGTTGATGTTGATGTTGATGAAGATGATGTGCGCTCTGATCATGGTAATCATAGTTTGACGATAGATAATGATTTGATTAATTCAACAAGTCATGTTGAAGTGATAACAACAAGTGCCACTAGTGCTCATTTCAttccatttgaaaaattaaatgattcaaTGACAATTTTGCCTGATAAACAAAGTAATACATTGCATTTGATAtcgaaacaaaatgaaaattccccAGTATTGACAATTCCAAATCCTCAGGGtaatgagaatttttcaagTCAAATTGTACACATTACAAATTCAGATTTGCCAATGAATGTTGTGACTCATAGTGTAAAGGATGGTGATTTAAAGTCTGATGTAAATGATGAGACAAGTTTGATGCACGATGaggatttgaaaaatgttgttattcaTGAAGAGCAGTACGATGATAGTGATGATGGTGACGAAATGGTTTGTGGTATTTGTGGCGAAGATTTTCATGATAAAAATGTACTCATGGAACacgtaaaaattcatatttaa
- Protein Sequence
- MESHEEEYVTFPLSNVHDGLQQNVISHEEICEPVVEECVLDDDDLTEVSVNEANSSSITEAHVAVTILNDGRSDEDDDGSNIYPVYIKEEHQYTSGDDESMAVEALRQLGGMYPNFNDEKKIGCSNCSNTFTQAEFEKHHQTCLPDKFSCSTCGEKFERKIDLVNHTVCHQVDRPHACRTCGNLFKSKSLLQAHMTEYHQIERPHKCAICGADFMRPSSLSNHMKIHTYVAGRAIMQTQENNVAQSSESFRKWSDNNVNETQQSVSVPSSSVQIIQNYDVSQVQWSVPGYTFANEQVVGSLGNQDKLDTLQEFTVMPNGEVTQFEYAAQTEIANQIGDYNLSLNSFCSSDAMVKVESLSFNDNRRNFNEVEVIENKAYTCNQCGVSFSRPNALTSHEKTHNAKTWATPIECKYCDKQFQDENHLATHQQTCAKRIMQNCNEQGLPNSRWGKHACSECGKKFTTKQKMFRHQWIHRKKTHCCEVCGTQFEKQNQLDEHRLAAHPGDSPFTCNECGKSFVSRQGLWEHGRMHAGSPAHFQCDACSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKNETGISGPPFPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKTLANNNAPKSSTTSSTAKSSKKKKSGSTSKIQEIHMISNTEQNEALLSITDSSMKSDDSQIVDGQIEIPYREIVDVDVDEDDVRSDHGNHSLTIDNDLINSTSHVEVITTSATSAHFIPFEKLNDSMTILPDKQSNTLHLISKQNENSPVLTIPNPQGNENFSSQIVHITNSDLPMNVVTHSVKDGDLKSDVNDETSLMHDEDLKNVVIHEEQYDDSDDGDEMVCGICGEDFHDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880674; iTF_00883244; iTF_00882392; iTF_00881472;
- 90% Identity
- iTF_00880674;
- 80% Identity
- -