Lbou011563.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000226.1:354056-356015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.39 42 5.3 0.4 2 23 101 122 100 122 0.96 2 15 6.5e-05 0.007 17.2 0.2 3 23 128 148 127 148 0.97 3 15 4.7e-07 5.1e-05 23.9 2.1 1 23 154 176 154 176 0.98 4 15 0.034 3.7 8.6 4.4 1 19 220 238 220 240 0.95 5 15 0.067 7.2 7.7 0.2 5 23 248 266 247 266 0.93 6 15 8.7e-07 9.4e-05 23.1 3.9 1 23 273 295 273 295 0.98 7 15 4.7e-05 0.0051 17.6 2.2 1 23 301 323 301 323 0.95 8 15 2.9e-05 0.0031 18.3 0.6 1 23 329 351 329 351 0.98 9 15 2.5e-05 0.0027 18.5 8.1 1 23 357 379 357 379 0.98 10 15 4.1e-07 4.4e-05 24.1 0.4 1 23 384 406 384 406 0.96 11 15 0.0001 0.011 16.6 1.1 1 23 412 434 412 434 0.97 12 15 3.8e-06 0.0004 21.1 4.6 1 23 440 462 440 462 0.98 13 15 2.2e-06 0.00023 21.8 0.7 1 23 468 490 468 490 0.98 14 15 4.7e-06 0.00051 20.8 5.2 1 23 496 518 496 518 0.99 15 15 2.8e-05 0.003 18.3 1.5 3 23 526 547 525 547 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACTCAGTAATGCTCGAAAAGGCACTTTTGTCTATTGAAAGTCACGATATGGATTTCTCGGTCGAAAtggaaaaactgGACTTGGAAAGCGAGAGTACTCATGAAAATTGGGAATCTGAATTAACAAATACAAATCTCTGTGACAAAGATGATGTCAATCTTCAAAGATGTTTTATCAATATTGATTTGGATTCAATAAATCAAGAagaagatgatgatgaagaagaaattattgagaaatctccatttttatcaataaataattatcatcatcagacaaaattttacaaaattcaatgtttcatttgtcaaaaatggtttttaaataatgacacAATGGtgacacatttaaaaattcattgcaaTGGCAATAATTGTCAAGTATGTGATGAGAATTTTCCCAATAGCGAAACACTCTCTACACATATGTTAATTCATATTGGCATGAATCTCTTTGAATGtaatatttgtcataaaacATTTCCCGATAAAATAAGTTtacaaaatcatttaaaatcacaTTCACTTGAcgatgaattattaaaaaataaagaagaagaagaagaagaagaagaagaagaagaaaaagaaagagaatttAGTAccgtgagaaaaaaaatttccaaatcgattaaaaataatgacaataattttttctgtgatatttgtcaaaaattatttaattcaaaacatGATTTCAATCAACATAGTCATGaagataatataaaatctaatttatgtAATGCATTATTTAAcgataaagataaattaaatttacatataaataatcataatcatagaatgaaacaatttaaatgtacattgtgtaaaaaatgttttacacaAAGAGCCGCATTAAATAATCATATGTTATCGCACAGTCATGATAAACCTCATGCATGTCAAATTTGTTCAAAgcaatataaaagaaaatcagaATTAATGAGACATTCATTGGTTCATACTGGTGAACGACCATATGAATGTAAAGAATGTCTAATGACATTTCGCGAGAaggcaaaattaaattcacataTGTTGGTACATACGGGTGAAAAACCACATACATGTCATATTTGTCATAAGGCATGTGCAAGAAAATCAGATTTAACTAGTCATATGCTTTCGCATACAGGCGGACAATATGATTGTAATGTTtgtgagaaaatatttacgcGTAAATCAGATTTAAATCGTCACGCGTTAATACACACAGGTGAAAAACCATTTGCCTGTGAACATTGTGATATGGcttttagagaaaaaacaaGACTGAATTCACATATTTTAATGCATACTGGTGATAGACGGCATGTTTGTCATATTTGTCAAAagtcatttaaagaaaaggcaatgttaaagaaacatttattgacACATATGGGtaatcaattttatgaatgttatgtttgtcaaaaaacatttgcacaaaaaacaacattaaatagtcatattttaatacatgATGATGTTTCATCATATGAATGTAGCCATTGTCAAAAGATATTTCATGATAGAAGTGAATTGAAAAAGCATTTATTGACACATGCgggtaataaatttaatgattgtccaatttgtttgaaaaaatttacacacaGATCGGCATTGAATAATCATATTTCGAATTCGcataatacttaa
- Protein Sequence
- MEDSVMLEKALLSIESHDMDFSVEMEKLDLESESTHENWESELTNTNLCDKDDVNLQRCFINIDLDSINQEEDDDEEEIIEKSPFLSINNYHHQTKFYKIQCFICQKWFLNNDTMVTHLKIHCNGNNCQVCDENFPNSETLSTHMLIHIGMNLFECNICHKTFPDKISLQNHLKSHSLDDELLKNKEEEEEEEEEEEKEREFSTVRKKISKSIKNNDNNFFCDICQKLFNSKHDFNQHSHEDNIKSNLCNALFNDKDKLNLHINNHNHRMKQFKCTLCKKCFTQRAALNNHMLSHSHDKPHACQICSKQYKRKSELMRHSLVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHTCHICHKACARKSDLTSHMLSHTGGQYDCNVCEKIFTRKSDLNRHALIHTGEKPFACEHCDMAFREKTRLNSHILMHTGDRRHVCHICQKSFKEKAMLKKHLLTHMGNQFYECYVCQKTFAQKTTLNSHILIHDDVSSYECSHCQKIFHDRSELKKHLLTHAGNKFNDCPICLKKFTHRSALNNHISNSHNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -