Lbou016781.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000203.1:46734-55062[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9e-05 0.002 18.9 2.5 1 23 284 306 284 306 0.99 2 15 0.06 6.4 7.8 1.0 3 23 312 333 310 333 0.91 3 15 2.5e-06 0.00027 21.6 0.5 2 23 382 403 381 403 0.97 4 15 4.5e-06 0.00048 20.8 3.8 1 23 409 431 409 431 0.98 5 15 0.00077 0.082 13.8 0.1 2 23 438 459 437 459 0.94 6 15 1.9e-07 2e-05 25.2 1.0 1 23 481 503 481 503 0.97 7 15 2e-07 2.1e-05 25.1 1.2 1 23 509 531 509 531 0.98 8 15 1e-05 0.0011 19.7 1.0 1 23 537 559 537 559 0.98 9 15 0.0021 0.23 12.4 0.3 1 23 565 587 565 587 0.98 10 15 1.5e-05 0.0016 19.2 0.2 1 23 593 616 593 616 0.92 11 15 1.6e-05 0.0017 19.1 1.3 1 23 622 644 622 644 0.98 12 15 0.00035 0.038 14.9 4.7 1 23 650 672 650 672 0.98 13 15 3.6e-06 0.00039 21.1 0.2 1 23 678 701 678 701 0.96 14 15 3.7e-07 4e-05 24.2 1.0 1 23 707 729 707 729 0.98 15 15 1.3e-06 0.00014 22.6 4.2 1 23 735 757 735 757 0.99
Sequence Information
- Coding Sequence
- atgtcattttcatCTACTCTCGTTGAAAAGCATCAGTTCGATTCGCATTCCGAGGATAATCACAAAGattctgtaaatttaataaaaaagacacGTTCACAgtcaaatgaacaaattaaaaatgcaaatagaGGACAAATTGatgttattaaaatgtccgACGATATTTCTCACTATAAATATCTATTTGTTTATGAAGATAGAATATCAagatatattgttttaaaagcaTTACAAAGTAATAATCCAAAAGAAGTGGCAATAAAACTTTTAGATGTTATGACAATAATTGGTGTTCCTGAAATTTTACAATCGGAAAATGGTGAAAATTAtgctaaacaaattttaaatgaactatttaatttgtggaataatttgaaaataatttccgatgatattgtaaaatttaaaaatgaaagaaattttccaaCCATCATTAAATCATGGTTGACAAAAAATCCCCAAAAAACATGGATTGaaagtatcaaatttattCAAGTAATGGAAAATGCAACATTTtctactgaaaataataaatatccatatgaatcatattttaaaagaaatatttatgatgatttttattcaaatgatagagaaataaaaagcaGTGAGTCTctaacaagaaaatttaaatcggAAATAGATATTCAAGATGATAATTCATCTATTTCAGATGATCACGATTTTGACGATCAAATTAACAATGAgaataccgaaataattgaaaattcatcgaTAAAACAttcgaaaagaaatttgaCAACAGTAAAAATCGAATCATTGGGAAATGATTCAGATGAAgtcgataaattaatttctttaagaaaaacaaGAAACAATCAtacatttaaatgtaaattttgtccAAAACAATTTACAATGGCGGGACATTTAGCAAATCATTTGAAATCGcacaaaaaatcaattgattgtttaaagtgttcaaaaaaatttcgcacTCAAgccatttataaaaatcatgtaCAAGAATTTCACAATGAAATTTCCACTGAcattgatattgaaaattcactCGACGaacaaaaagtgaaaattgtttcaaaaaaaattgctatttcagaaaaattattcgaatctcatgggaaaaaattgaaaaaattgaaattaaacgaAACACTTGAATGTAATTATTGtggtcaaaaatttgaatttccaaGTGTATTAAAAAGACACATTCGTTCACATACAAATGAAAGGCCATATGTTTgtgaaatttgtaataaaagttttaaacaacACGGTCATCTTAATCAACATTCAATAACGCACACTGATTACAGATCATTACAATGTAATCAATGTGGTGTTAAATTTGAATCTCTAGAtgcattaaaaatacattcggAAATTCATCCTTATGATTCGTCAATGTCATCGTTTCTTAAGAAAAACATTAATCTAACAAAACCTCGTCTTTTCGACTGtgatatttgcaaaaaagtaTTCACCAccaaaagtgttttaaaaagaCATATTTTAACACACACACAAGAACGACATTATGAATGTGATATTTGCGGTAAACGATTTAAACAATCAGGACATGTGAAATCTCACATGTTGGTTCACACTGGTGAACGACGATTTCAATGTGCAATTTGTTCAAAACGCTTTAGTTTAgcgaattcattaaaaaaacatatgtaCATACACAATGGCGATAAACCATATCAATGTGATATTTGTGGTGcaagatttttagaaaaaagaaatttcaatggCCATCTATTGACACACACTAATGAAAAGccatttgtttgtaaaatttgtggtaaaaaatatacactCGCCGATACATTAAGACGACACGTGAGTGCAGCACACGAAAATGGTAGAACTTATCAGTGTGAAATTTGtgcaaaaatgtttaaacaattggcGCATTTGTCAGTTCATAAAAAAGTTCACACCGATGAACGTCCATTTCAATGTCATTtgtgtgagaaaaattttaaacataaaaatgttttaaaatcacaTTTGGCAATTCATGCCAATGTACGTCCATTTGAATGTGATGAATGTAAAGCGACATTTGTTAGAAAAACAAATCTTCAAACGCATATTGCATCGGCACATATGAATGAAAGACCATATACGTGTAATATTtgtgggaaaaaatttaaacaagttAGTCATTTAAATGGACATATTATTGTGCATAGTAATTCTATGCCATATCAATGTGATTTTTGTGATCGACGATGTAATCGATtggataatttaaagaaacatatGAGAATTCATACGAAAAcaacaaaagaaattgataatgtattaattattggTGGAGcgacaaatttcaattctcaAATTGGTcatgtgtaa
- Protein Sequence
- MSFSSTLVEKHQFDSHSEDNHKDSVNLIKKTRSQSNEQIKNANRGQIDVIKMSDDISHYKYLFVYEDRISRYIVLKALQSNNPKEVAIKLLDVMTIIGVPEILQSENGENYAKQILNELFNLWNNLKIISDDIVKFKNERNFPTIIKSWLTKNPQKTWIESIKFIQVMENATFSTENNKYPYESYFKRNIYDDFYSNDREIKSSESLTRKFKSEIDIQDDNSSISDDHDFDDQINNENTEIIENSSIKHSKRNLTTVKIESLGNDSDEVDKLISLRKTRNNHTFKCKFCPKQFTMAGHLANHLKSHKKSIDCLKCSKKFRTQAIYKNHVQEFHNEISTDIDIENSLDEQKVKIVSKKIAISEKLFESHGKKLKKLKLNETLECNYCGQKFEFPSVLKRHIRSHTNERPYVCEICNKSFKQHGHLNQHSITHTDYRSLQCNQCGVKFESLDALKIHSEIHPYDSSMSSFLKKNINLTKPRLFDCDICKKVFTTKSVLKRHILTHTQERHYECDICGKRFKQSGHVKSHMLVHTGERRFQCAICSKRFSLANSLKKHMYIHNGDKPYQCDICGARFLEKRNFNGHLLTHTNEKPFVCKICGKKYTLADTLRRHVSAAHENGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYTCNICGKKFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRIHTKTTKEIDNVLIIGGATNFNSQIGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -