Lbou001145.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000137.1:440783-441676[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 2.4e-06 27.5 0.0 4 42 27 64 24 67 0.87 2 2 8.8 7.3e+03 -2.8 0.0 14 23 143 152 142 153 0.78
Sequence Information
- Coding Sequence
- ATGGGGAATGCGAAAATAAAGTCAAAGGAAAAGGCGAATTCAAAATCGAAGAAAAGAGTCCCTGCATACAAACAAGAAGATGTAAAATCTGCCGTCGAAGAGGTTCTCAAGGGAGTTTCTATTGCCGAAACatcgaaaaaatataacatccCTGACTCAACattaagagataaaaaaaaccgaaGGTATGCGAACAAGAAATCAGGCCCAGCCACTATTCTTAATACAGAAGAAGAAGATAACCTAGTCAGTTGGATTTTTCATTGTCACAATAAAGGTTTTCCTATAACGAAACAACAACTATTAGACAGTGTTCAACTTTTATGTAAccatgataaaaagaaaacacctTTTCTCAATAATAAACCGGGACGCAGTTGGTTTGAGGGTTTTCTAAAACGCCATCCTGAATTGTCACAGagaatttcagaaaatgtATCATTAAATCGAGCTCAAGTGTCCGAATACCGTATTCGATCATGGTTTAACGAAATCACCGAATATCTTAccacagaaaatttattatcaattcacACAAGCAGAGTATTCAATGCTGACGAAACTGGTGTTCCTCTAAACCCGAAACCACCTGCAGTCCTTGCTCCAAAAGgttctaaaaatgtttataacattgtcgataacaataaaaaggaaaacgtGACAGTATTAATCACAGCCAACGCTGAAGGAACGCTTGCTCCACCCATGGTGCTTTTTACTGGAAAAAGTGTACCAAAGGATGCAGTCCGTATAGCACCAGAAAATTACAGTTTTGGATTCTCTGACCACGGTTGGATGACTGCGAAAAACTTCTACGAATATATGGCTAACGTGTTTCTGCCATGGCTTGAGAAAAGTGGAATTGAActtccaattattttatttattgaatga
- Protein Sequence
- MGNAKIKSKEKANSKSKKRVPAYKQEDVKSAVEEVLKGVSIAETSKKYNIPDSTLRDKKNRRYANKKSGPATILNTEEEDNLVSWIFHCHNKGFPITKQQLLDSVQLLCNHDKKKTPFLNNKPGRSWFEGFLKRHPELSQRISENVSLNRAQVSEYRIRSWFNEITEYLTTENLLSIHTSRVFNADETGVPLNPKPPAVLAPKGSKNVYNIVDNNKKENVTVLITANAEGTLAPPMVLFTGKSVPKDAVRIAPENYSFGFSDHGWMTAKNFYEYMANVFLPWLEKSGIELPIILFIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -