Lbou013495.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000678.1:81582-83833[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-07 0.00029 20.9 0.0 4 41 16 52 13 56 0.91 2 2 5.4e-05 0.045 13.9 0.0 3 36 66 99 64 106 0.86
Sequence Information
- Coding Sequence
- ATGATTCGTAATTATCAACGAAAAACAAAGCCTGTTgaccaaaaaattttggcaaaaGCGATTAAAACTGTGCAAAATGGAAATTCGATTTCGAAAACAgcgaaaaatttcaacttgaattttgaaacattGAGAACTCATGTCAATCGTTCGGGTGCGATACAAACGGAAAGACAACATAAGGCAGTGAATAAAACGCAATTGACACAAGCAATTACATCAGTTAACAAGGGCACAGGGATAAGAAAAGTCGctgatgattttaatattaactacCCAATTTTGCGAAGTAACGTCAGTTCCTCCAAGGAGCATTATTATAAGgtttttagCACCGAACAAGAAACGGCTTTGATGAATTATTTGCTCAAGTCTAGTGATTTGTTTTACGGTTTGTCGACAAGAGATGTTCAAAGTCTTGCATTTAGTTTCGCTAAACAATTGAACCTTCCGATGCCAAAAAGTTGGCAGGAGAATAAAATTGCCGGCGTAGATTGGTTAATTGGTTTTATGAAGCGCCATACAAATTTATCTCTCCGAAAACCTCAAGCAACCAGCCTGGCAAGAGCGACGAGTTTCAACCGACACAATGTTTCAATGTTTTACAAGAATTTAGCGACAGTTATGGACGAATTAAAAGTGTTACCTCAACAGATTTGGAACATGGATGAATCTGGCGTTACGACCGTTCAAAGACCAGATCGTGTAATTGCTAAACGTGGTGTGAAACAAGTTGGCAAATTGACGTCGGCAGAAAGAGGTCAACTAATTACAATTGCACTTGCAGTATCTGCAACTGGATCGTCGATTCCgccattctttatttttccgCGTGTTCGATTTCAGCCGCGGTTTTTAGACGGAGCACCACATGGTTCAACTGGCGCGGCACATATATCTGGATGGATGACTGCTGACAgctttttaatgtttttgaaacattttcaattctgtGTTGGGGCATCGAAAGATCAACCAAAATTGTTATTGCTCGATAATCATGATTCGCATTTATCGATTCAAGCATTGGATTATTGTGTCGAGCATGGCATTCATCTTGTATCATTCCCGCCACACTGTACACACAAATTACAGCCACTCGATCGTAGCGTATTCGGTCCATTTAAATCAGCTATTGGTCGCTCATTTGATGCGTGGATGAGAAACCATCCTGGTAGAACAATCACTATTGCCGACCTTCCAGCTTTATTAAATGAACCATACAAAGCGGCTGTCACACCGTCAAATATCCTGGCAGGCTTTGAATGTACTGGTATCTTCCCTTTCAATGACAATAAGTTTACAGACCTCGACTTCATGCCAGCCAGTGTGACTGACCGTCCATTACCGGAAGAAATCAGTGCAGAACCAAATGTAGCTGCTCAAGTTGTCATTGATGAACAAAATAATGAAGTGGATTTGGATTCTACGATAGAGTCAATATTACCATTTCCAGTAGCAGCGCCACGGAAAACGCATCGCGGGCGAAAACGTCGTTTCACATCGATTTTGACTAGTAACGAGTCAATGGTATCATTGCGAGAAGAACAGTTGGCAGCTGCCAATAGGAGAGCTAGTCGTGGTCGGGGTCGTGGTCTGATGGgcgatacaaataaaaatgtatcgaTACTTGAAACCGTCGATCCGATACTGAGTACGATACCAAGAAAGAAGTATCGATACCTGAAGTATCCATCTAAAGTatcgaaattatttgaaaaataa
- Protein Sequence
- MIRNYQRKTKPVDQKILAKAIKTVQNGNSISKTAKNFNLNFETLRTHVNRSGAIQTERQHKAVNKTQLTQAITSVNKGTGIRKVADDFNINYPILRSNVSSSKEHYYKVFSTEQETALMNYLLKSSDLFYGLSTRDVQSLAFSFAKQLNLPMPKSWQENKIAGVDWLIGFMKRHTNLSLRKPQATSLARATSFNRHNVSMFYKNLATVMDELKVLPQQIWNMDESGVTTVQRPDRVIAKRGVKQVGKLTSAERGQLITIALAVSATGSSIPPFFIFPRVRFQPRFLDGAPHGSTGAAHISGWMTADSFLMFLKHFQFCVGASKDQPKLLLLDNHDSHLSIQALDYCVEHGIHLVSFPPHCTHKLQPLDRSVFGPFKSAIGRSFDAWMRNHPGRTITIADLPALLNEPYKAAVTPSNILAGFECTGIFPFNDNKFTDLDFMPASVTDRPLPEEISAEPNVAAQVVIDEQNNEVDLDSTIESILPFPVAAPRKTHRGRKRRFTSILTSNESMVSLREEQLAAANRRASRGRGRGLMGDTNKNVSILETVDPILSTIPRKKYRYLKYPSKVSKLFEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -