Basic Information

Gene Symbol
JARID2
Assembly
GCA_011634795.1
Location
PHTE01000083.1:242217-248570[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.5e-23 2.6e-19 69.8 0.0 6 89 1308 1389 1304 1389 0.94

Sequence Information

Coding Sequence
atggtatTGAGTCGAAATgataaaaggaaaagaaaagaaggagATCTCGTGGACCTCATGGATCCATTGTCGGATTCACCAAAAAGAACCAAAATTCATGcacaaagaaaatttgcaCAGGGAGCTGCAACATTTTACAGTCCTTCCACTACACCTGTTAAAGAAAaggagaaagaaaaatcaaaaccaGCTGCTATTAATGAATTGATAAGTCACAAGCGACCGAATACAGAAGATTTTCTGACATTTCTATGTTTCAGAGgaACATCTATATTACCAtcaagtttgaattttttcaacgtTTGCGCAAAGAAAGATAAAGGCGATTTAAAATCCATCAAAGCTTCAAAGGCGAGTCCTTCTTCCAGTTCGAAACCAAGACCCACTGATTCCTCAAAATCTGATCCGTCCCAAAAAGCaactaaatcaaaaaataatgtgtccgttaaaaaagaatttcccaatggattaaaaaatacaattaaatttaaaacgaaaacgTCAACAGTACAAgcactaaaaagaaaatatcaagAACAGCGATTGGCGAAGCagcgaattaaaaataaaatcaagacGTCATATGTGATACGAACTCGTTCGAATTCGGagaaaaatgtcgaaaaatcATTGAACAAATTGTCATCGAGAAAATTTGTCACGAAACCAGAAAAAAGTAAACGACATGGTCTTCGAAGTGGCGGACTCATTGAACAGGTTTGCAATCCGAAAATTATTCCCAAAAATAAACGATCGATAAAACCACAGAAAAAaggatttggaaaaaataaaaataattcaaaggaTGATTATCTAGATTCGGATTCAGGTTCAAATgatgaagaattaaaattggcacaaaataataagaaaattggaaaatcagTGCCAAAGAAAATTTGCACAAGAAAAACAGAATTACGTCGAGTGACACGATCTTTTGTTGAAACAAAATCGACGCAAAATCTTTCACGAAGACCaacaagaaaaacaaaagaggCCGCTGCAGTTTACATGGAAATTTTGGGCCGAAAACTAGTCAGTCCCGATTTAGAGAATGACGACGATATTTCACTCGATAGTTTTCCCGAATTACCAAATTCGCGACGCATTTTAAAAGAGGAATTTGAGATCAAGGAAAAAGTCAAACAGAATGCAAAATCAGCTGCCAAAGAAAAGGAAATCAAAGTCGAAAATACTGTCAGCAGCAAGAGAATTGACAAACTTCGAACTgtcaaaactgttttaaagaGTAAACGAATAGTAAAAGTTCACAAATATTGTGAACTTGAAACTGACGAGGAGAGTGAAATTTCGTGTGATAGTGAAAAAAGTGGCAAAACAAGACCAATGACTCGACGAAGTTTAAATAAGACAAATAAACCCGCGAACAGAAGTTTAAGATCATCGTCAAGAAATCTTTCCGTTAAAGTTCAAGTTGAAAGTTGCGAAGTTCGAAAGTATATAGGCAAAAAGGAAgttaaaaaggagaaaattgtattgaaGAGAAAACGCGAACAAATCGACGAAAAGAATGTGGATAAGAAAGAGGAAACTCCAAAAGATGAAGAAACAAAAGATATTGAAACCTTGAAGAACAAGAAGGAGGGAAATTTAAAGAGTgatatagataataaaaagaatgatGGCGAAGAAGAAATCAAGAAGCTCAAGAAAGTTGAGGataaggaaaaagaaattaaaatcgaaacaGACGAATTAAaacaggaaattaaaaatagtgaaaaagatattaaagAAGAATCCGATGAGGAAACACTTTGTTCACTTCTCagtaaaataaaacgaaaacgTGAATCTGATGATGAATTGAgtaaaccaattaaaattctcaaagaGGTAAAAGACTCAAAAATGTCCGATGACGAGGAATCATTCCGTGGATTCACAAAAAAGGCAATTTCAAAGGTACTAGATACCTGTCAATCTCATGTGAATTCAAATCTTTTAGTAACCGAGAGTATTGAATCAAAATCCGTTCAAGTCTCATCAATTTCCCCCTTGGAATCCACTAAGGACTTGGACAAATCtcaaaatcaagaaaatccCACAATAATTCCATTCgagaaattaattgttatcgAGCCAAATGAAACACTCGAAAAAGATGACGTTGAAAAGCAAGATCAAAATACAAACAAGCCGAACAATGAAATCAAGATTATTGACATGCCATCAACAACAACTGTTGGCCGAAAAGAACGTGTCAACATGTCAGCcgaacaaattgaaaaatggctCACTGAGAGTTCCATTGCAAAAGAAGAGAATAAAGTCGAATTGGACACAACTTACAATTACGAAAATACAACTGAGAAGCCAAAAGTCTCTCATCATTTATCAATTTCCTCAAAAATACAACATCTAGTACGACCAGTTAACGTCACATTAGCTAAACTTCACGATAAATCGAAAgcacaaaaaattgtacttaATACACAAACTAGTCCCATTAAACCGAGTAGttcattaattgtaaaaaacaaagaaagcGAGCCAAAGGAACAAACaacaatgaacaaaatttcaaatttaaaaacgaacAAAGAATCGCCAATTGTCGATGATGATATTGTTTCCAAATCGGATCAAAATTCACCCGACGATACACCATCATCGGAGAAAAAGTGTCAGGATAAGAAAATTCTACCCCAACCGAGGAAATTGTTTCTACCAAAGGTTAAAGAGCGAAAAGTCACAACTCCAAGTGCAAATGCTTTTTCACCTGAGAATGAAAGTAGCGTTTACGCATTCGAAAGTGACACGGAAACACCAATCAGCACGCCATTTCGACGAAAAAGCAAACCACCATCGCCATCgaacaaaattcaagattCCAATAAAGATTGTACCGAAAAGAATGATGTTCAATCTCccgaaattgataataaagttgccgagaaaaaagaagagttAAATTCCACAAAAATCAATACAAACGATTTAAAAGGTTTTCCAAATTTAGCCAACATACAAGTTCTTTCACTTGATAAATTAACGACAAATTGGAGTAATGTCAATTGTAGTGCATCCATTGCCGTACAGGTAAATCTTGACGATCAAAATCAAAAGACTCAAAATCCAGATGACGATAATAGTCAACAAAAAAGTACCGAGATATCAACACAAACTGAAGGATCAAATGACAATGATGACGATAATGATGGACAACTATTTTACATTCCATTGCAAGCGGTCACAAGAAATGGATCAAATTTGGTGCAAGGTCAACAATTAATTCAAGGAGTTGCTGTTAAATTGGGAACCGAGGGTCCAACAGGACCTAATCAACGTGTTTTATTGAAGGCGAAACTCGTGACAAAACCAACATTAACCGTGGCACGTGTTCCTCCAGTTGGAACAGTTCAACCAACAGCACGAGCACCGCCAATTGCCTCTACTTCCAGCGCTGAAAATCCAATCGCATCGACTTcgtcattaatttcaaattcacaaATTCTTCCAATTAATAAGGATTCTCAAAGTACAAGCACTACCATCGGAACGGAGAAAATTGCCAAAATCACAAAAGTACCACGAGAACGAAAAATGTCGGTTGAATCTgctaaatttggaaaaagattcCAAGGCAAGTCAAAGCAGAAAATTGTTGAAGTTTGCACGCCAATAAATACGACAACATTTCCAGGGACAAAAGATCCGAATGAAGAGGCACGCCTCGTGGAAGCACCGACATTTCATCCATCGGAGAAAGATTTTCAGGATCCTCTCGAGTATATCGATAAAATACGTCCGATTGCTGAGAAATTTGGCATATGTCGCGTAATTCCACCTCCAAATTTTAAACCTGAATGTAAAGTATCGGACGATATGCGATTTACTGCCTATAATCAATATGTACATCGAATGCTTCATCGTTGGGGACCCAATGTTAAAGAAATGATGGCAATTCGCAAATATTTGGCAACACAAAGTATAACATTGAATCATCCGCCCTGGATCGGTGGAATGGAAGTTGATCTTCCTCATTTATACCAAACAGTTCAAAGTCTTGGTGGCTTGAAGGaagtaattgaaaagaaaaaatggcaaaaagtTGCCGACGGAATGAAAATACCACGATCTGCTCAGGACCGCGTTACCAAATTGGATGATATTTActgcaaatatttattgccATACGATACACTTTCGCAGGGCGAAAGGGACAAATTATTTGAGGAGGTAGAATTAGAATGGGCGAATAGAGAAGCCAAAGCAATGTTGAGATTGGAGTCACAGTcaaatgataatgatgatgaggAGGATGATGATAGCTCGGAGGAAATTGAGGAATGTATCGTTAAAGGACGAAATATGCCGCTTAATGCATTTTATCGAATTGCGAGGAATACACAGAGAATGTGGTTCGCTGATAATCAACGATCGTTGAATGAAATTGAAGGAGCCTCAGCGTCTGAGGTTGAAGCTGCATTTTGGAAACATGTCACTGAGAGAAAACGTCACGTTTGTGTTCACGCGGCCAGTATTGATTCCAGTGGTCGTGGATTTGGATTTTCCGTCGCCAAGAACAGTCCCTTTGCACGACATCCTTGGAATTTAAAAGTTCTCACCAATAATGCTGGATCTGTGCTCAGAGCATTGGGACCATTAATGGGTGTGACAGTGCCGACACTACATGTGGGAATGTTGTTCAGCGCTTGTTGTTGGTATCGTGATCCCCATGGACTGCCTTGGATAGAATATTTGCATACtggtgggaaaaaaatttggtacgGCATTCCCGATgagcataataataattttagaaatgcaCTTGCAAAAATGGTGCCACGATATTGCAAAAACAAAACTATTTGGCTACCATCTGATACTGCCATGGTACCACCAGAATTGCTCGTGAAAAATGGAGTTCCATTGTGTCAAACTGTTCAGGAACCTGgacaatttattgttgtatttCCAAAAGCATTTACTTCTAGCATTTGCACCGGATATGTTGTCTCAGAAAGTGTTTATTTTGCTCAATCACCTTGGCTTGAAGCCGCGGAACAAGTTTTCAAGgaTATACAAGATAGTTGCGAACCATCTATATTTTCTTTGGAGAAATTACTCTTCAGTATTATTAACGATTCGAGGTCACATATTGAAGTTTTGAAACagatattgcCAACAGTAAAAAGAGTTTGCGAGAGAGAAATTGATTTTCGTAGGCAATTGAAGGGATTGGGTTTGACTAATACGGAAAAACTACCAACGCCTGAAAGTTGCAAAAGAGGAAAAAGCAAGAAAGTGAAAGAAGAGGACGGTGATTTTGAATGTGAAACTTGTCGATCTAATTTATTTGTCTCATTAGTTAATAATTCTCAAGATGATAGTATGTATTGTCTTCCACACGCGATTCAACTTTTAACTAGGAAAAAAcagataatgaaaaattgtgttcTTATGATTACATATAGTGAGgaTGAACTGGATGATTTAATTCACAAACTAGAAGACAGAATTGAAGCAAAATCCAAGAAAAATTACTCATTTAAGCAAAATAagtag
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLSDSPKRTKIHAQRKFAQGAATFYSPSTTPVKEKEKEKSKPAAINELISHKRPNTEDFLTFLCFRGTSILPSSLNFFNVCAKKDKGDLKSIKASKASPSSSSKPRPTDSSKSDPSQKATKSKNNVSVKKEFPNGLKNTIKFKTKTSTVQALKRKYQEQRLAKQRIKNKIKTSYVIRTRSNSEKNVEKSLNKLSSRKFVTKPEKSKRHGLRSGGLIEQVCNPKIIPKNKRSIKPQKKGFGKNKNNSKDDYLDSDSGSNDEELKLAQNNKKIGKSVPKKICTRKTELRRVTRSFVETKSTQNLSRRPTRKTKEAAAVYMEILGRKLVSPDLENDDDISLDSFPELPNSRRILKEEFEIKEKVKQNAKSAAKEKEIKVENTVSSKRIDKLRTVKTVLKSKRIVKVHKYCELETDEESEISCDSEKSGKTRPMTRRSLNKTNKPANRSLRSSSRNLSVKVQVESCEVRKYIGKKEVKKEKIVLKRKREQIDEKNVDKKEETPKDEETKDIETLKNKKEGNLKSDIDNKKNDGEEEIKKLKKVEDKEKEIKIETDELKQEIKNSEKDIKEESDEETLCSLLSKIKRKRESDDELSKPIKILKEVKDSKMSDDEESFRGFTKKAISKVLDTCQSHVNSNLLVTESIESKSVQVSSISPLESTKDLDKSQNQENPTIIPFEKLIVIEPNETLEKDDVEKQDQNTNKPNNEIKIIDMPSTTTVGRKERVNMSAEQIEKWLTESSIAKEENKVELDTTYNYENTTEKPKVSHHLSISSKIQHLVRPVNVTLAKLHDKSKAQKIVLNTQTSPIKPSSSLIVKNKESEPKEQTTMNKISNLKTNKESPIVDDDIVSKSDQNSPDDTPSSEKKCQDKKILPQPRKLFLPKVKERKVTTPSANAFSPENESSVYAFESDTETPISTPFRRKSKPPSPSNKIQDSNKDCTEKNDVQSPEIDNKVAEKKEELNSTKINTNDLKGFPNLANIQVLSLDKLTTNWSNVNCSASIAVQVNLDDQNQKTQNPDDDNSQQKSTEISTQTEGSNDNDDDNDGQLFYIPLQAVTRNGSNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPTLTVARVPPVGTVQPTARAPPIASTSSAENPIASTSSLISNSQILPINKDSQSTSTTIGTEKIAKITKVPRERKMSVESAKFGKRFQGKSKQKIVEVCTPINTTTFPGTKDPNEEARLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKFGICRVIPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIRKYLATQSITLNHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQGERDKLFEEVELEWANREAKAMLRLESQSNDNDDEEDDDSSEEIEECIVKGRNMPLNAFYRIARNTQRMWFADNQRSLNEIEGASASEVEAAFWKHVTERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGGKKIWYGIPDEHNNNFRNALAKMVPRYCKNKTIWLPSDTAMVPPELLVKNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQSPWLEAAEQVFKDIQDSCEPSIFSLEKLLFSIINDSRSHIEVLKQILPTVKRVCEREIDFRRQLKGLGLTNTEKLPTPESCKRGKSKKVKEEDGDFECETCRSNLFVSLVNNSQDDSMYCLPHAIQLLTRKKQIMKNCVLMITYSEDELDDLIHKLEDRIEAKSKKNYSFKQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00882738;
90% Identity
-
80% Identity
-