Lari014804.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637282.1:4530890-4544174[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6 2.2e+02 2.7 3.3 1 23 172 194 172 194 0.96 2 12 0.36 23 5.8 3.4 3 20 248 265 247 265 0.96 3 12 6.2 3.9e+02 1.9 1.1 2 14 346 358 346 362 0.89 4 12 0.92 57 4.5 3.5 1 23 368 390 368 390 0.96 5 12 0.74 46 4.8 1.4 1 23 958 980 958 980 0.93 6 12 0.0018 0.11 13.0 0.4 1 23 985 1007 985 1007 0.98 7 12 0.035 2.2 9.0 0.3 1 23 1038 1059 1038 1059 0.97 8 12 0.0062 0.39 11.4 0.2 3 23 1153 1173 1151 1173 0.96 9 12 2.1e-06 0.00013 22.3 3.2 1 23 1179 1201 1179 1201 0.99 10 12 3.8e-06 0.00024 21.5 0.5 2 23 1207 1228 1206 1228 0.95 11 12 0.01 0.65 10.7 6.8 1 23 1234 1256 1234 1257 0.93 12 12 0.004 0.25 12.0 0.6 3 23 1295 1316 1294 1316 0.94
Sequence Information
- Coding Sequence
- atgtttcacgaaagaaaaaaatgtagaaaaaCGAAGCTTGTTCCACGTGAAATAATTGAATCGGACGAAGAAATATTTGCAATGCAGAGTGTGGTGGAGAACACATTAGCAAGAATTAACAGACCTTTTAAAAGGGCGTTAACCTCAGTATCCGTTGCCACTCCATCAATTCTCTTAACTACAAATCCCATTGAGAAAATGGATGCGTGTGAAAATAATGGTATGCCAATGaattttgacattaaaatacaagTGGAGAAAGTTGATGACAATGAAATAGAAAGGTATCAAGAATCATTAAGTCGGAGTGAAATTTTAAAGGAGTCAACTAAAATTTACCTAAACACACATAATATTTGTGATAAAATGTTACATGCACAGGTCCTAAACATCTGCACACCAGATGTGAAAGCATTCGTAAAATCACCGCACGACAAACTCTTGGACAGGGCGCTCCAACGATGGTGCGATTGGGCATCCCTCACAGAGGAACCCAAAGACCCACCGTTATTCTACAAATGTTACATTTGCGATATGGCGTGGTGGCATTTATCCCACTTCCGCGACCACACACAAACCCACAACCCATCCACACTGCGTGTGGTTTTAGAAATGAACGACTACGCGGAATGCAATATCGTCGCCTACGTCAATAAATCGATCAACAGGCACATTGGGAATATAGAAGGCAAATGTTGGAAGTGCGGTGAGACAGCCATCGAGCATACAAAGCCCAAAAACTGTAGCGGATGTAAAAAGAGACTGTACACGTGCAGCAAGTTACGACAACACCAATGGTACTGCGAAGGCTTCAAAAAGATGCACCTGGAACTGTTCACGAAAGCCGAGAAGATATTGAAATGTCACCTGTGtcggttttattttttcaaaacgGAAGACAGCATACAGCATATGATAACGAGGCATTCTGTGCGATCAGATGTACCGATACCGGGTTGTGTTGTTTGTGTGAGGTGTAACGGTTTGATGGCATCTGAGGATGAGCATGCGTGTGAGACTGACGAGTATGTGGAGACGTGTTGTGAATGCAAGAAGAGAGTCACCAGAAGCAGTGCTGCGTTGCATCAAGTTGAAGGGAATTTCACCTGTTCCATATGCAATAAGAGAATTGTGAAAAATTGTTCTGTGCACCTGCACGCACTAACTCACACGGTGAATTATGGAGCTGCGTATAAATGTCTCACCTGTAAGGGGTTCATAATATTCGACGAGGAACTGATAACGAGACACCAACTGGCATATCATTCAGGTCGCGACTTTGATTATGATCTTaTTATGGTCCCAAAAACAATAGTGgacagaattaaattaatacctaATAAAAtctcaCCTAAATGTGAACCAAGAGACAGTGACGATGACATTCATGAAATAGAAGACGACGACGATGTCATAATCGTTGATAATGTACCGGACGTTGTATATGTACCGGGCGATGATGAACCTTCGGATATACTAAAGGAAGACCTACCTTGTGTCATTGCGAATATCAAATCTGAACCGCTCGAAAGTGAAATACAACCATCAAACACTGACGCATCGAGTGACAAATCAGAGTTTGAAACGTATGTTATCAAAGTACCGAAAAACACGAAGGGCACGGTTCAGTGCTTCTTAGATAGAAGCGGAATCGATGAtagtaaaaaagtattaaccATTGATCAGTTTCAAAACGAGGTTAATAGTGAACTGAATTTGGCTGTACAGTCTATACTCGGTGCTAGACACAATACGGCaaacgattttaaaaataatgacgaAAACAACACACCCATAACTCGGGCTGTACAAAGTACAAGTGATACGTATGTTGATGCTAACATCAAAGATCTTACGAGGCcattgattaattttaaaaaatcaatggatttaacatataaagaaATGGAAAATAGAAAAAGAACAGGAATCCAACACACAGAAATCGATATAGAAGGTGAGCTGCCTTTAGCATATGTTAAAACAAAGAGTTCCATGCCTAAACGAAACATtgagaaatataataagagGAGACTAAGGCAGGAAACTGAATCCAATGTAACTttgcttaaaaataaaaacccaAAATCTCATATAAGAATGGAGGTTTTAAAACGTTTACATGTCGATGAGAAAAGAGAAGACACACGAAGACCAGATCAAGTAATAAaagttgaaacaaaaaaacccGACATTCCCTCGAGAGAAGTAACTCTCaatattcaaaaacaaaatacaatcaaAAGCATAAAACAGTACAAGGTGAAGCTGAAAAAGACCCTGCTGACGGGCATTACGCAAAACTCGGAACCAACTATCAAAATGGAGGTCCTGAAGAGTGTACAAGTGGCGGAGAATAGGAGCTTACTCAGAATGGAATCGTTGCAAACGGACGAACTGAACACACAAACACAAGAAATAAACACAGATCTCCATACAGAACGAACAAACGCACTGGCGAAGTTACGTACTGTTGAAATCGAAGTGCCCGTTCGCATAAAGGAGGAGGCGGATCCGGAGATGGATTTAAAATTATCGGACATCAAGAAGATATATCACATCAATGTTGATGTCGGTGAAAATGAGGTTATTGTGAAGAGTGAGTTCAATGAATTCGATGTAAGCGAACAGACGGAGGATTGGCATGTGGACAACTCGGATTATAATTCTCAGAATTCGAGTGATGATGAATTCGAGAATGACCTGATCACACTCACACCATTCACGAGTAGTGCGCCCGACGACGGTGTGCAggtgaaaaaaagaaaatgtggAAAAATATACAGCTGCACACGTTGCAATTTCCAAGGGGTGCACAAAGTGTTTAAGCAGCATAAACAGAGGGAATGCTTCAAAGTCTCCTTCTACAATTACTACTGTTCCATATGTATGAAACGTTTCATCACCATATACACATATGTGTTGCACTTTGTGAAGCACAACGTGCCGAATTTCACGTGTCCCAAATGTGGCCACAAGTCCGATACGGCCAACGGACTGGCAACGCACGTGAAGGTGCATATTAAAAGTGAGATCGTGTCGTACCGATCGTTGAACTCTGATGACATATCGAAATCACCGCTCGACAAAGTAGGCAGGGATCGAACAACGTATAAATGCAACGATTGTGGTAGTGCAGTTACGCCACGTGATTTCTTCAAACACTGGGATACGCATCTCAATTTGGACAATATAAGAGATACACAGTTGAAGTCGAAAGTGGAGGAGTGGCATCGGCCTCACGGCTTTCAAACATTGATTGCTGATGATAAACTAGAGCTTAATGAAGCCTTGGAATTGTTCACTAACCCGGAGAAATTGATGGCGAAGTGTAACTTCCGCGTGTGCATACTCTGCTCGCGGCATTTCTCACGTCAGAACGATTGCAAACGTCACCTGATCGAGCACTTCTTGAGGAATGCGTACGCGCACAAAACTAGGTTGGGTGGTTTGGCTTGCCAAATATGCGGAAATGTGTACGATAAGATTGACATGTTCAGGAGCCACATGCGTTTGCACGCGTGTCTGCCCGTATACAAATGCGAGATGTGCAATAGGACGTTCAGTGATTCGAGTAACTTTTCCAAACACAAGAAGGTTCACAATTTCCAAATATTGATTTGTGATATATGCAAAaagaaattcaataataaatcctACCTCGCGCGACATATACAGGCTCACGAAACAACACCCGTACACACATGTGAAATATGTAAAAAGACATTTTTCACTACATCGTCATATAAGAGGCACGACAGAGTACACCACAATGTGACACTGAGGTCCAAATGCTATGAatgtaatttagtttttttgacAACAAAGGAGAAATTCGATCATATGTGGATTGTACACAATCAAAGACAAGTTCAAGCGGACTGCTCCCTGTGCGATGCTAAGTATCGGAAAAAGGCTGATCTGAAACGTCATTATGTCAAAGTGCATGCCTTTTACGACTTTGACACGCCTGACAATAAAGATTTTGTCGTTGTGAAAACTGAACCTGTTGATAGTGATTAG
- Protein Sequence
- MFHERKKCRKTKLVPREIIESDEEIFAMQSVVENTLARINRPFKRALTSVSVATPSILLTTNPIEKMDACENNGMPMNFDIKIQVEKVDDNEIERYQESLSRSEILKESTKIYLNTHNICDKMLHAQVLNICTPDVKAFVKSPHDKLLDRALQRWCDWASLTEEPKDPPLFYKCYICDMAWWHLSHFRDHTQTHNPSTLRVVLEMNDYAECNIVAYVNKSINRHIGNIEGKCWKCGETAIEHTKPKNCSGCKKRLYTCSKLRQHQWYCEGFKKMHLELFTKAEKILKCHLCRFYFFKTEDSIQHMITRHSVRSDVPIPGCVVCVRCNGLMASEDEHACETDEYVETCCECKKRVTRSSAALHQVEGNFTCSICNKRIVKNCSVHLHALTHTVNYGAAYKCLTCKGFIIFDEELITRHQLAYHSGRDFDYDLIMVPKTIVDRIKLIPNKISPKCEPRDSDDDIHEIEDDDDVIIVDNVPDVVYVPGDDEPSDILKEDLPCVIANIKSEPLESEIQPSNTDASSDKSEFETYVIKVPKNTKGTVQCFLDRSGIDDSKKVLTIDQFQNEVNSELNLAVQSILGARHNTANDFKNNDENNTPITRAVQSTSDTYVDANIKDLTRPLINFKKSMDLTYKEMENRKRTGIQHTEIDIEGELPLAYVKTKSSMPKRNIEKYNKRRLRQETESNVTLLKNKNPKSHIRMEVLKRLHVDEKREDTRRPDQVIKVETKKPDIPSREVTLNIQKQNTIKSIKQYKVKLKKTLLTGITQNSEPTIKMEVLKSVQVAENRSLLRMESLQTDELNTQTQEINTDLHTERTNALAKLRTVEIEVPVRIKEEADPEMDLKLSDIKKIYHINVDVGENEVIVKSEFNEFDVSEQTEDWHVDNSDYNSQNSSDDEFENDLITLTPFTSSAPDDGVQVKKRKCGKIYSCTRCNFQGVHKVFKQHKQRECFKVSFYNYYCSICMKRFITIYTYVLHFVKHNVPNFTCPKCGHKSDTANGLATHVKVHIKSEIVSYRSLNSDDISKSPLDKVGRDRTTYKCNDCGSAVTPRDFFKHWDTHLNLDNIRDTQLKSKVEEWHRPHGFQTLIADDKLELNEALELFTNPEKLMAKCNFRVCILCSRHFSRQNDCKRHLIEHFLRNAYAHKTRLGGLACQICGNVYDKIDMFRSHMRLHACLPVYKCEMCNRTFSDSSNFSKHKKVHNFQILICDICKKKFNNKSYLARHIQAHETTPVHTCEICKKTFFTTSSYKRHDRVHHNVTLRSKCYECNLVFLTTKEKFDHMWIVHNQRQVQADCSLCDAKYRKKADLKRHYVKVHAFYDFDTPDNKDFVVVKTEPVDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -