Lari008374.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637271.1:3155308-3160713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3 84 4.0 12.3 1 23 519 542 519 542 0.96 2 10 0.045 2.8 8.6 0.6 2 23 548 571 547 571 0.87 3 10 0.00013 0.0081 16.7 0.3 2 22 622 642 621 642 0.95 4 10 7.5e-05 0.0047 17.4 1.8 1 23 694 715 694 715 0.98 5 10 3e-06 0.00019 21.8 0.6 1 23 721 744 721 744 0.97 6 10 0.0049 0.31 11.7 2.1 2 20 762 780 761 782 0.93 7 10 0.49 31 5.4 1.0 2 23 789 812 788 812 0.94 8 10 0.00066 0.041 14.4 4.3 1 23 818 840 818 840 0.98 9 10 0.0014 0.09 13.4 2.7 1 21 846 866 846 871 0.92 10 10 0.34 21 5.9 0.6 1 23 877 900 877 900 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCTCCTCATGACGACGATGACGACAATCATCTATGCATCAAATGCAATGCGACTATTGTAGGACTGGACAATTATGTGAAACATCGAAAAGAACGGTGCGGAAAGTTGAAGAGCGTTGAAAAATCAGTACTCCCAGCTATAGACCCTCTAGAACCCTCATACAGTCTCGGTGCAGATGTTTTCTTCCAATCCTTAGAGCTACAGAGTAGCGTTAAAAAATCATCCTCACTATCAAGACTCACTCCACCAACAGTCATCTACAAAACTAGCTCAGATCGCAAACACACTCATACAATCGCATCAACTTCAACGGATATTCCGAGAATGAGCCCACTGGAAAATAACTTGAGGGGAGAAGATTGGATTGGTGGACATAGTTTAAAACTTGAAACAAGTGAAGATAACcagatgaaattaattaaagcggTCGCAAGAATTAGTGGGGCAGCGAAGAAGGATGTAACAAACTCTACATACAACATCAATGCGTATAATGACTTTAAAGATGATTTAGACGAATCAGATGATTCCGAGGAGGACGATGAAGAAGAAACTGCTCATGTAGAGAAATGGAAACCTCCGCCGAATTATACGGGTGGTAAATGGCGCCCAGCATCACCTGATCACGATGCATGGGAGCCTTTGAATATAGATACACACGACCGAGACGAAGACTATGACGCCCCACCTCCAGATTACACGAAAGGCAAGTGGGTGCCAGGACAAGACAAGACTCAAATAATGCAAACTACAATTCAATCTAAAGGTTCAGTACAGTACTGGTGCGGGCCTTGCAACCGTCGTCTTGGTTCCAGAGCTATTTACGATAAGCATCTAATGTCAAATTTACACATGAAAAAAGTCCTTCCCGAACATGAGCTAGAATTCGCCGGTCATTTGCAATCACTTAAAACCATACCTGAGAAACGAACTACTCGGTCCGCATACTTAAATACAGAAGTAAgtcccaaaaaaaaacaaaagatacTGGAAACCAAGAAGATATCTAAGAAGAAGAGAAAACGCAAACCTGTTTTCGTACAATGCTCAGGTTGTAAATCGCGTGTAAAAGTCCACCTCATGGGCAAACATTTGATTTCACATTACCATTTTCGAAAAGCTACTGATACGAAAAGCGAAGATTATAAACagctcattttaaataatatggaCGCTATAGTCCACCAATCACCATTCCAGTGTAGCCCCTGCAAGTTTTACACGAATTGGCTTTCAAACTTCATGCAACATTGGTATTCTGAAGAACACCAGAAAAATGTGGAGTCTATTAACGGGAGATTCTGGTGTTCGTTCTGTAAATTTGAATGTGAGGCATCTCAAAAGATGCTAGATCATTTATCAAGTTCGGAACATACTGAAGTTGTAGCTGTCATCAATAGATCAATGCCAATCATAATACGAAAGAAGACAGTAATTAAATGTGCGACATGCTTAAATGAATTCCGCTATAATGTTGAAGTGAAAAAACACTGCCTCAAAACAGGACATGTGGTACCGCCTTCCGCGAGCGATATGTGTCAAGAGCTTCATAAGTGTCAgcactgtaaaaaaaaattcaagtcTTCTATTACCCTTTGCTGCCATTTGAAGTCAGAGCATAAAGCCCAAGTATTTTTCTGTATCGTTTGTTCGAAAGTGTTTGATTCGTCTTCCGAAGCGAAGCAACATCGCCAAACGTCCGAACATAGAGTGAGGACTAAGGAAAAGTTGATAGCTCGTGGGCTAAGCACAAAGGATTTAACAAAGAAATGTCCATATTGCCCTGGAAAAGTACTGTTGAGGAACGTTCTTGAACTTCGAGATCACGTAAGACGTGTCCATCCTCATATAAAGAAGAAGTGTTCAAAATGCGGGAAAGCGTTCACACTCCCCCAAGAAGTGACCCGTCACATTAGAAGCAACTCTTGCCAGTTTTTAGAGCCGAACTCCGCGAACACAGCCGGCCTTTGGAACTGTAGCCAATGTCTATTTACCACAGACTCACAGGCTGAATGTTTCTTTCACGAAGTCCTTCACACTGAGCCAAATGTCGACGATAAGGAAGCAATAAAATACTCATGTCCACTGTGTAATAAGGTGTTCAAGAAAAAATCATTACGCGATCATTTGAGACAGCATACGTTCGAAAGGCCTTTTGCTTGCACCATTTGTGGTGCTAATTTCACACGTCAGAGCAGTCTCAGTAACCACGTGAAGACTAAACATGACAATAAGGAGCAGTGTACGTCTACTAAGAGCaaaattactataaatttACGATGTCAAAAATGTAAGAAGAAATGTAGCACCGAAGATGAATTGACAAGTCATACAGCTTCGTGCCAGGTTTATCAATTACAATGTACTGAGAATCAGTGTACTTTCATTGCTAGTACGCCCACACAGATGTTTCGgcATCGCAAGAGCCACGGTATTGCTAAGGCCCATGAATGTTCGGAATGCAACTTCAAGACTGATCAAATAAGTCATTTGAAGCGACACATGATAACACATAAGGGCCTTAAACCTTATGCGTGTCCCCATTGTAACTTCACTTGTGCTAGtttggaaaaTCTACGAAAACATGTGCTAAAAGGAAAAAAACATCCTGGAATGTATCTTTATAGGTGCAAGTCTTGTGAATACTTAACTAATTTAGCAAATGATTTGCGAACTCATTACATTACAATTCACTCAAGAGCGTATAACCTCAAATTGGCTATTGAAGAAgtcaaaaaacaattattaacgaAAGATACGTGA
- Protein Sequence
- MLSPHDDDDDNHLCIKCNATIVGLDNYVKHRKERCGKLKSVEKSVLPAIDPLEPSYSLGADVFFQSLELQSSVKKSSSLSRLTPPTVIYKTSSDRKHTHTIASTSTDIPRMSPLENNLRGEDWIGGHSLKLETSEDNQMKLIKAVARISGAAKKDVTNSTYNINAYNDFKDDLDESDDSEEDDEEETAHVEKWKPPPNYTGGKWRPASPDHDAWEPLNIDTHDRDEDYDAPPPDYTKGKWVPGQDKTQIMQTTIQSKGSVQYWCGPCNRRLGSRAIYDKHLMSNLHMKKVLPEHELEFAGHLQSLKTIPEKRTTRSAYLNTEVSPKKKQKILETKKISKKKRKRKPVFVQCSGCKSRVKVHLMGKHLISHYHFRKATDTKSEDYKQLILNNMDAIVHQSPFQCSPCKFYTNWLSNFMQHWYSEEHQKNVESINGRFWCSFCKFECEASQKMLDHLSSSEHTEVVAVINRSMPIIIRKKTVIKCATCLNEFRYNVEVKKHCLKTGHVVPPSASDMCQELHKCQHCKKKFKSSITLCCHLKSEHKAQVFFCIVCSKVFDSSSEAKQHRQTSEHRVRTKEKLIARGLSTKDLTKKCPYCPGKVLLRNVLELRDHVRRVHPHIKKKCSKCGKAFTLPQEVTRHIRSNSCQFLEPNSANTAGLWNCSQCLFTTDSQAECFFHEVLHTEPNVDDKEAIKYSCPLCNKVFKKKSLRDHLRQHTFERPFACTICGANFTRQSSLSNHVKTKHDNKEQCTSTKSKITINLRCQKCKKKCSTEDELTSHTASCQVYQLQCTENQCTFIASTPTQMFRHRKSHGIAKAHECSECNFKTDQISHLKRHMITHKGLKPYACPHCNFTCASLENLRKHVLKGKKHPGMYLYRCKSCEYLTNLANDLRTHYITIHSRAYNLKLAIEEVKKQLLTKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00431038;
- 90% Identity
- iTF_01205292;
- 80% Identity
- -