Basic Information

Insect: Leptophobia aripa
Gene Symbol: -
Assembly: GCA_951799465.1
Location: OX637282.1:3900239-3906959[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.019 1.2 9.8 0.6 1 23 340 362 340 362 0.98

2 11 0.0043 0.27 11.9 8.5 1 23 369 391 369 392 0.94

3 11 0.15 9.6 7.0 1.9 1 23 396 418 396 418 0.97

4 11 0.051 3.2 8.5 1.8 1 23 423 446 423 446 0.97

5 11 0.034 2.2 9.0 0.2 1 23 450 473 450 473 0.93

6 11 0.036 2.3 8.9 0.1 3 21 487 505 486 510 0.93

7 11 0.32 20 6.0 0.4 2 23 552 574 551 574 0.95

8 11 0.0076 0.48 11.1 0.7 2 20 590 608 589 611 0.91

9 11 3.1e-05 0.002 18.6 0.2 1 23 617 639 617 639 0.97

10 11 6.4e-05 0.004 17.6 5.6 1 23 646 668 646 668 0.98

11 11 2.9e-05 0.0018 18.7 4.0 1 23 674 697 674 697 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.019	1.2	9.8	0.6	1	23	340	362	340	362	0.98
2	11	0.0043	0.27	11.9	8.5	1	23	369	391	369	392	0.94
3	11	0.15	9.6	7.0	1.9	1	23	396	418	396	418	0.97
4	11	0.051	3.2	8.5	1.8	1	23	423	446	423	446	0.97
5	11	0.034	2.2	9.0	0.2	1	23	450	473	450	473	0.93
6	11	0.036	2.3	8.9	0.1	3	21	487	505	486	510	0.93
7	11	0.32	20	6.0	0.4	2	23	552	574	551	574	0.95
8	11	0.0076	0.48	11.1	0.7	2	20	590	608	589	611	0.91
9	11	3.1e-05	0.002	18.6	0.2	1	23	617	639	617	639	0.97
10	11	6.4e-05	0.004	17.6	5.6	1	23	646	668	646	668	0.98
11	11	2.9e-05	0.0018	18.7	4.0	1	23	674	697	674	697	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTAAAACCCTGCAAAAATGATTCCAGAACGATCTCCAAATCAAACGGGATTACATTTCATGCgttTCCCATCGAACCAAATCTGCGTCAAGCCTGGTTGATAGCAATAGGCAAGGAATCATGGTCTCCTAGAGAGCGTAGTGCTGTCTGCTCCGACCATTTTATGAAAGATGATATTTTTGTCACCAAGAGTGGTTTAAGAAAAGTAAGAAAAGGGGCAGTACCAATTTCAGATagCTCTGGTTGTAGCtacaatgaaaataatgttagtCTTTTGATATGTAGAATATGTCTTGGTTCAGATGTGAAGTTGGTACCTAttggaaaatttaatttggaaCAAACATATGAGCATGTTACTGGATATTCTATGTCAAAAGGAGATAATTTACCTCAATACATTTGTTTTGAATGTGCACATCGGCTAACATGCTGTCacatgtttaaaacaaagtgtATAAAATCAAGGATGCTTTTATTGGATCTGATATCAGATAATAGTAGTATAAGTTTAGCCAGTATTAAATCAATAGACAGAAAAACACTTAAACTTACATCTGAATTATCAACAACAATATTGAATCCagataaagtaataaatctaGAATATGTCGAAAATGTTAATCAGATTGAAATTATACCAGATGAAGATAAAAACGATATATTCGTACAAGATTTACCAAAAGACTTTGAAGATGATTTTAATGATACAGACAATTTTAACGATACTCAATTTAATGATACAGACAATGTTAATGATAAACATGATAACAATTGTGACAATTACTCATCCGATGACAGCCTACCACTCGAGTTGCAAAGGAAGAGGCGTAAAAAGGCgaaaaaagtgaaaaaaataatcgaaCCGAAGATCGATAGGCGTCGGAAGCCATTTTTGAATGctgatttaaatgaaacattgTTCACAATCACGGATCTGACGGTTGACGAACAAGTCGCCGAGATACAGAAGAGGCGGGAGTCGGCTAATTATAAAAACGCAGTTTTCAAATGTACCGAGTGTTTTAAGGGTTTCTTGGATGAGGACGCGTACAATGGACATATGACGCGACATACAAATCAATGCGGCGAACACGAATGTGGTATATGTAAGACACACTTCAAACACCCGCACGCGTTGCGCAAACACATCACAGCGCACCACACACAGCGGTACAATTGTAACAGATGTCCGTATGTCACTACGCATAGACAAACGGCGAGACTCCACGAGCGATGGCACAAAGGCACGAAGTACCAGTGTCCACATTGTCAAGATGAGTTTGTTAAATTCACAACGTACATGGGCCACATACGTATAAAGCATCCGTCTGACTTCATTTGCGTTCTGTGTGGGTATTCCTTCGTGAGTGAGAAAGGGATAGAGCtacataagaaattaaaacatcGTCTCAATGATGGAAAgATACCAGATAATGGACCGCTCTGTGAGTTGTGCAATGTTCGTTTTGTGTCCGAGGAGGCGTATAAGAGACATTTAAGCGTGTCCGCCAGACATACAAATGaTTCAAAAGAGAAATCAAAGAAAGGCAGAAAGACACGCGAGAAAATGGagaaaaatgatattttcgATAGAAAGAAAAATTATCCGAGCCAATTGAGAAAAGCCGAGGGTCCGATACCTTGTGAACAGTGTGGCGTTGAGTTGGAAGACTCTCGTGCGTACCACAGTCACTTTAGACGGCAGCACCCAGACAAAAATCGAACCAACTACCCCTCAATGAAGTCGCCTTGTATGTGCGAGGTTTGCGGTAGAATGTTTcagAGTTACGCCCTCCTCAAAGACCATCGTTGGGTACATACAGGCGAGCGTCCATTCGCCTGTTCGATATGCGGCAAATCGTTCCGTATGAAGCAGCGTTTGGTTGCCCATGGGCGCGTGCACAGCGAACTGAGAGCGTCATACACTTGTGCCATGTGTGGCAAGAGTTTCTCAACACATAGCAATTGTCAGCGGCACATGTTTATACACACCGGCCTCCGTCCGTACAAATGTGAAATGTGTGGGAAATGTTTCAAACATGCGAGTGAAAAACGTGCCCATATCACATATGTACATCTTAAGAAACCCTGGCCCAAGCGCAGTCGGGGCAAACGGACCGGCAAGGGTCCCTTAGACCCGATTGGTATGGCGAGTGAAATGGATCCCCAAGTATGGCCGACCCCATGTGACCCCAAATTACTTGATGACCCGTTGATAGATAagtctatttattataatattaaaatgtaa
Protein Sequence: MRCCVKPCKNDSRTISKSNGITFHAFPIEPNLRQAWLIAIGKESWSPRERSAVCSDHFMKDDIFVTKSGLRKVRKGAVPISDSSGCSYNENNVSLLICRICLGSDVKLVPIGKFNLEQTYEHVTGYSMSKGDNLPQYICFECAHRLTCCHMFKTKCIKSRMLLLDLISDNSSISLASIKSIDRKTLKLTSELSTTILNPDKVINLEYVENVNQIEIIPDEDKNDIFVQDLPKDFEDDFNDTDNFNDTQFNDTDNVNDKHDNNCDNYSSDDSLPLELQRKRRKKAKKVKKIIEPKIDRRRKPFLNADLNETLFTITDLTVDEQVAEIQKRRESANYKNAVFKCTECFKGFLDEDAYNGHMTRHTNQCGEHECGICKTHFKHPHALRKHITAHHTQRYNCNRCPYVTTHRQTARLHERWHKGTKYQCPHCQDEFVKFTTYMGHIRIKHPSDFICVLCGYSFVSEKGIELHKKLKHRLNDGKIPDNGPLCELCNVRFVSEEAYKRHLSVSARHTNDSKEKSKKGRKTREKMEKNDIFDRKKNYPSQLRKAEGPIPCEQCGVELEDSRAYHSHFRRQHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFACSICGKSFRMKQRLVAHGRVHSELRASYTCAMCGKSFSTHSNCQRHMFIHTGLRPYKCEMCGKCFKHASEKRAHITYVHLKKPWPKRSRGKRTGKGPLDPIGMASEMDPQVWPTPCDPKLLDDPLIDKSIYYNIKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01206897;
90% Identity: iTF_00878911;
80% Identity: iTF_00878911;