Lari015269.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637283.1:1760027-1761907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.84 52 4.7 2.2 1 23 56 78 56 78 0.94 2 16 0.86 54 4.6 0.1 2 22 107 127 106 129 0.87 3 16 0.028 1.7 9.3 0.2 3 23 151 172 149 172 0.94 4 16 0.0029 0.18 12.4 3.7 1 23 177 200 177 200 0.95 5 16 0.0023 0.15 12.7 0.3 1 23 205 228 205 228 0.95 6 16 0.098 6.1 7.6 0.7 2 23 231 253 230 253 0.97 7 16 0.27 17 6.2 1.2 2 21 260 279 259 280 0.91 8 16 0.00085 0.053 14.1 1.3 1 23 335 357 335 357 0.97 9 16 0.031 1.9 9.2 0.1 2 23 384 406 383 406 0.94 10 16 0.017 1.1 9.9 0.5 2 23 429 451 428 451 0.95 11 16 0.00022 0.014 15.9 0.9 3 20 458 475 457 479 0.93 12 16 0.075 4.7 8.0 1.0 1 23 484 507 484 507 0.96 13 16 0.0007 0.044 14.3 0.5 2 23 513 535 513 535 0.92 14 16 0.00076 0.047 14.2 3.4 1 23 539 562 539 562 0.97 15 16 0.00056 0.035 14.7 0.4 2 23 569 590 568 590 0.96 16 16 0.19 12 6.6 2.2 1 23 596 618 596 618 0.97
Sequence Information
- Coding Sequence
- ATGTACCCacattattttacacaatCACAATACGGtacatttaaagttatatatctCTTTACAGATGCTAAATATGGCGGCGTACCATCATCGATGCGCATCCGACTAAACCTAGTCACACTGTTCAATAAAACAACGATTATTCCGTTTAAATTTCGCGGCAAGTACCTCTGCTTCTTCTGCAGCAAGTACATCGACAAATATACCGATCTGCGTCAGCACACGAGGGAGCACGGGGAATGCACAGCGCGCACGCACTCGTTGAAAGCCATCAGGGGCGTTAGTAACGTGGAGATAAAGATTGACGTGTCGGATGTCAGTTGCGCGATATGCGGCGAGGTGTCACCGAGTGTGCGTCACGTGACCGAGCATTTGGTCGCGAAGCACGGCGTGGAGTACGACAGCGGTATACAGATGCCGTTTGAGGAGTACCGTTTGACGGATCTAGCGTGTCTGTCGTGCGACGAGACGTTCACGTTTTTCGGTTACCTCGTGTCGCACGTGAACGTTCGCCATCCGAAAAACGTGTTCGCGTGCACCAAGTGCGAACAGAAGTTCAATAAGAAGCGGGATTTGTTCTCGCACACGAAGAACTATCATCGCGACGGCGGTTTCGTATGTGATACGTGCGATTTGACGTTTGCGTCTTTGAACATATTGAACAAGCACATGATCAATCGTCACATTACGCGTTGTAGTATATGCTTTTTGAAACTACCCTCCGCTGTGTTGAAACGTAAACATATGAAAACCGAGCATCCGGATGACGGTTGTTTGAAATGCAAACTGTGCTCTAAACAATTTCATACGGACATCGGTTTGAAAATGCATTCGAGGAATTGTAGGAATAACGACATGCCGATAGATGACAACGACTGTGGCATGGACTCGGACGTGAAGTACCATGCCCCGAAACGTAAGAGCGTGAAACAGTTGCGTGAGAACATTTGTATCGTTATCACAATGTCCACTGCGATACCGTTCAACTTCTTCCAGAACAAATTCAACTGTTTCTTCTGCTCCAAAGACTTCCAAGATCCGGATACGCTCAGGGAGCACACGTTGACGCACGTAACGTGCGACGTGCGTCAGACTATACGCAAATGTCGCGAGTCCGAGTCGTCCGTCAAAATTGACGTGTCGTCGTTGTCGTGCAAGTTGTGCTTCGAGTCGTTGTCCGATTTGAACGCACTGATAAACCATTTGATTGTTAAACACGACGCGAACTACGACAGAACGATCGACACGTGCCTCCAGCCGTACAATCTGGTTAAGGATCACATGCGTTGTCCTCTGTGTTCGGATGTCTTCCGTTTTTTCGGCACGCTGCTGAAGCACATGAACGCAAAGCACACGGAGAACAAGAACATTTGCGTGCATTGCGGCCAATCGTTTCGAAGGGAGCAAAATTTGCGGGTACACCTGTGGCGGCGTCACAGCGCCGGAAAGTTCAATTGTAACACGTGCGGTGTTAATTGCGACATACCGTCAAGGCTGTTCATGCATATGGCGAAACAGCATGGTGTTAAGGCGGCAAAGTGTCCGATATGCCACGAGGCGTTTGAGACGCAGTACCTCAGACAGAAGCATCTGATTGACGCGCACAATACGGGCCACAAATGCACGTACTGTGGCAAATTGTTTACGCGCGAGTCGTTTATGGACGATCACGTGAGACGTACGCATCTGAAGGAGAGGAATGTGGAGTGCACGGTGTGCGACGCGaagtttttcaataatatccTGTTGAGACGACACCAGGTGAAGCATAGTGGTGTTAAGAGTTTCCATTGTGATGTATGCGGCGATAGGTTCTATTGGAAGAAGAGTCTGAGCACGCATATGGTTAAGCATAAGAGGAATGATGAGTTGCATCGTTGA
- Protein Sequence
- MYPHYFTQSQYGTFKVIYLFTDAKYGGVPSSMRIRLNLVTLFNKTTIIPFKFRGKYLCFFCSKYIDKYTDLRQHTREHGECTARTHSLKAIRGVSNVEIKIDVSDVSCAICGEVSPSVRHVTEHLVAKHGVEYDSGIQMPFEEYRLTDLACLSCDETFTFFGYLVSHVNVRHPKNVFACTKCEQKFNKKRDLFSHTKNYHRDGGFVCDTCDLTFASLNILNKHMINRHITRCSICFLKLPSAVLKRKHMKTEHPDDGCLKCKLCSKQFHTDIGLKMHSRNCRNNDMPIDDNDCGMDSDVKYHAPKRKSVKQLRENICIVITMSTAIPFNFFQNKFNCFFCSKDFQDPDTLREHTLTHVTCDVRQTIRKCRESESSVKIDVSSLSCKLCFESLSDLNALINHLIVKHDANYDRTIDTCLQPYNLVKDHMRCPLCSDVFRFFGTLLKHMNAKHTENKNICVHCGQSFRREQNLRVHLWRRHSAGKFNCNTCGVNCDIPSRLFMHMAKQHGVKAAKCPICHEAFETQYLRQKHLIDAHNTGHKCTYCGKLFTRESFMDDHVRRTHLKERNVECTVCDAKFFNNILLRRHQVKHSGVKSFHCDVCGDRFYWKKSLSTHMVKHKRNDELHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205947;
- 90% Identity
- -
- 80% Identity
- -