Basic Information

Insect: Leptophobia aripa
Gene Symbol: -
Assembly: GCA_951799465.1
Location: OX637282.1:4570453-4577117[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.087 5.5 7.7 1.0 1 23 358 380 358 380 0.98

2 10 0.0031 0.19 12.3 4.4 1 23 387 409 387 409 0.98

3 10 3.5 2.2e+02 2.7 0.1 1 11 413 423 413 430 0.83

4 10 0.0005 0.031 14.8 0.6 2 23 442 464 441 464 0.96

5 10 8.8e-06 0.00055 20.3 1.5 1 23 472 494 472 494 0.97

6 10 4e-06 0.00025 21.4 0.4 1 23 499 521 499 521 0.99

7 10 0.0025 0.16 12.6 0.1 3 22 530 549 528 553 0.93

8 10 1.7e-05 0.0011 19.4 0.1 2 23 559 580 558 580 0.97

9 10 1.7e-05 0.001 19.4 8.1 1 23 585 607 585 607 0.99

10 10 0.0012 0.077 13.6 1.6 2 21 617 636 617 637 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.087	5.5	7.7	1.0	1	23	358	380	358	380	0.98
2	10	0.0031	0.19	12.3	4.4	1	23	387	409	387	409	0.98
3	10	3.5	2.2e+02	2.7	0.1	1	11	413	423	413	430	0.83
4	10	0.0005	0.031	14.8	0.6	2	23	442	464	441	464	0.96
5	10	8.8e-06	0.00055	20.3	1.5	1	23	472	494	472	494	0.97
6	10	4e-06	0.00025	21.4	0.4	1	23	499	521	499	521	0.99
7	10	0.0025	0.16	12.6	0.1	3	22	530	549	528	553	0.93
8	10	1.7e-05	0.0011	19.4	0.1	2	23	559	580	558	580	0.97
9	10	1.7e-05	0.001	19.4	8.1	1	23	585	607	585	607	0.99
10	10	0.0012	0.077	13.6	1.6	2	21	617	636	617	637	0.94

Sequence Information

Coding Sequence: ATGTCCTCGTTTTTGTGTTTCTTATGCCACAGTACAGTTAACGATGAAACAAATGAAGAAACACGCGAGAAATATAAGGAAGTTGTTGGCATACATTTGTGTCCTGACTCTCACCTTTGCTATATCTGTTGTCATGTTCTACATAAACTCTTTATGTTTCgttcaatttgtttaaaacgaAGTTTGGAATATCCTGTGTTGTTCAGcgAAAAGGgtacaataaatttacatagaagtgatatagaaataaacatattatgccCAGAAGAATGTGACCAATATCACGAGAAACAATATCATTATGATtacaataatgattttaacaCACACTTTAACGATAATAGATTTAATGATAACCAATATGTGGAGTTGGAAGACgaattttactatttcaatAGAAATCAATATGACATTGAAAAAGTCACCGAAAACTATGACTGTATTAATGAAAAACCTGGTGATATGTTAAACGATGAACACTTTCATAATTTCAATCATAACTTGGATTACTTTAAGTATAACGAAGAAATACCGCAGATCAATAATTTACACGTGAATAGAAATAATGAGaatattggttttaattataacgacAATAGAACTAACGATTACACAAATGTGTTTAGTCAAAATACCTTCAACATACCATTGGATGACTAtgataatcaaataaaacataatattataaatcaaacGTACGTAgagaaagaaaataatataacggaAAAGAATAACGATTTAGAAACATGCTATTCACAAGAgaccaatataaatattaatgaaaaagtGGGTGACGATGCTAAAGAACAGATTGTTAATGATATTATAGAGCAAGATAATGATTGTAATGATAATGAAGAAACTAATGATGTTTCGACAGATGATGAAAAtcagaatatattaaacacatcTGATACCATTAATACGGAGGATAAATGTGAAATTGAAATTGtcaaagaaataaatgtaaaaaggaGAAGGAAAGGTTTCAAAAGAATTGTGTTGTCTCTGGAAGAGCAGAAAAAAGAATTGGAATGTAATAGGAAAAGCAAAAAGTACATGGAAGCCGAATTTAAGTGTTACAATTGTGCAATTGGTTTTTTGTTTAAGGATACATACCAGGCTCACATGATGAGGCACGAGGagTCGAACGGTGAGTTTCGTTGTGTGACGTGCACGCTACGATTCTCAACGCACGCGCTGCTGCGTACACACAAAAAGTCACACACGGACATTTATGAGTGTCTGGATTGTGGTCACGTGCTGAAGCCGAGGGCGAAGCGGACACACCCGTGTTTCCAAACGAAACACGACGAGAATGTTTCGTGCCATTTGTGTGGGAATCTGTTTAGagacGCAAATGGACTGCAGCAGCATTTGAGGCGTGTGCACGCAAAGGCATCGAACCGACTGCACTCGTGTACGATATGCAATGAGAATTTTACAAATCCATCGGTTCTAAAGACGCATATGATAAAGCACATAAATCGGAAATTTCAATGTGAAAAATGTCCAGCGGTTTACAAGAGCCCATACACTCTTGCGCAGCATATGAAGAGGCACGAGGTGTTCGGCGAGAAGTACGGCTGTACACTTTGCGATGTAGTTTTTGATAGTCGGAAAAGCCTGTTGGCACACTACAGGCGGACCGCAGCTCATCAGAATActgtTCTAGAATGTTCGATATGCAGCAGAGTGTTCGCAACCCAATCGTCGTTGGATGCGCACGCGCAGACTCACACGTCCGCTCAATACCAATGCACGCATTGCACACATACGTACACCACGAGAAAGTCGCTGATACGGCATATGAGGAGGCATACGGGCCAAGAGCTGGTATCACCCGCGGTCTGCCATTTGTGTGGTAATACTTTTAAGGGTAAGAACAAGCTGAACAGACATCTCAAACAAGTATGTGAAAAGTCAAAATTGGAGGAACAACTTGCTTCTATATACGACTAA
Protein Sequence: MSSFLCFLCHSTVNDETNEETREKYKEVVGIHLCPDSHLCYICCHVLHKLFMFRSICLKRSLEYPVLFSEKGTINLHRSDIEINILCPEECDQYHEKQYHYDYNNDFNTHFNDNRFNDNQYVELEDEFYYFNRNQYDIEKVTENYDCINEKPGDMLNDEHFHNFNHNLDYFKYNEEIPQINNLHVNRNNENIGFNYNDNRTNDYTNVFSQNTFNIPLDDYDNQIKHNIINQTYVEKENNITEKNNDLETCYSQETNININEKVGDDAKEQIVNDIIEQDNDCNDNEETNDVSTDDENQNILNTSDTINTEDKCEIEIVKEINVKRRRKGFKRIVLSLEEQKKELECNRKSKKYMEAEFKCYNCAIGFLFKDTYQAHMMRHEESNGEFRCVTCTLRFSTHALLRTHKKSHTDIYECLDCGHVLKPRAKRTHPCFQTKHDENVSCHLCGNLFRDANGLQQHLRRVHAKASNRLHSCTICNENFTNPSVLKTHMIKHINRKFQCEKCPAVYKSPYTLAQHMKRHEVFGEKYGCTLCDVVFDSRKSLLAHYRRTAAHQNTVLECSICSRVFATQSSLDAHAQTHTSAQYQCTHCTHTYTTRKSLIRHMRRHTGQELVSPAVCHLCGNTFKGKNKLNRHLKQVCEKSKLEEQLASIYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01202745;
90% Identity: -
80% Identity: -