Lari015316.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637283.1:1876177-1879010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.8 1.7e+02 3.0 6.5 1 23 46 68 46 68 0.94 2 15 0.75 47 4.8 0.1 2 23 102 124 101 124 0.91 3 15 0.017 1.1 10.0 2.8 2 23 147 168 146 168 0.97 4 15 0.03 1.9 9.2 0.2 1 23 172 195 172 195 0.96 5 15 0.0064 0.4 11.3 5.2 1 23 200 223 200 223 0.98 6 15 0.0022 0.14 12.8 2.1 2 23 231 253 230 253 0.95 7 15 0.00015 0.0096 16.4 0.2 1 23 334 357 334 357 0.92 8 15 0.00032 0.02 15.4 1.8 2 23 430 451 429 451 0.97 9 15 0.0006 0.038 14.5 3.5 1 23 455 478 455 478 0.96 10 15 0.0033 0.21 12.2 1.8 1 23 483 506 483 506 0.93 11 15 0.028 1.8 9.3 3.1 3 23 515 536 514 536 0.95 12 15 0.15 9.3 7.0 3.8 2 23 547 569 546 569 0.94 13 15 0.00016 0.0098 16.4 4.3 1 23 575 597 575 597 0.97 14 15 1.1e-06 6.9e-05 23.2 1.4 1 23 603 625 603 625 0.99 15 15 0.00016 0.0099 16.4 5.0 1 23 631 654 631 654 0.98
Sequence Information
- Coding Sequence
- ATGAAGATCGATATAGAAAAAGAACAGAACGAAgcggatttaaaaaaactcttaACCGCTTATACGAGAACGAATTTCAAAGAAATCGTGTTATGTACGAACGCGTCTCCAATACGAAGCAAAGTTGGACGTGAATATCTATGCTGTTTTTGTTCGGATCGTTTCAAAAAACCGGCCTCACTCAAATCGCACACGCATAAACACTTGGCCGGTTTAGAGAATCAACGCAATGAGAGGATATTGAAACAGGTGATCGATGGGAAGAATCGCGtaccatttataaaattagataTAACAAAACTGACGTGTAAACTGTGCggaatgttaattaataattacgatGATGTTATCAAACATCTGATTGAAACTCATAAACGTATCATTCATCAGAACATAAAGAATCTAATAGTACCTTTCAAATTTGATATAGACGCCTCAGTTTGTTGTGTTTGTGCTAAAGAGTTTGCGTCGTTCAAGTGTCTGGTTGAACACATGAACACGCATACAAGTAACTATGTCTGCGATCTCTGTTCAGCGACGTTCATAGCGATGGATCGTTTGAAGTCACACATAAAATTGAGACACGCATTGGGCGAGTTCAAGTGTCATTCATGTTCGAAAATGTTCAATATGAAAGTGAAATTGTATCAGCACGAACGTAGAATGCACAGGCAAGCGAAACAGGTGAAGAAATGCGATTATTGCAATGAGACATTCGATACGCAGTGGGCGAAGCAAAAGCACCAGTTCAAATATCATGGTGTGACTGTAGCTGTGTTGAAGAAGGTTACATGTGAATTGTGCATACGTGAATTTCCCAATGTGGgTTTTAAAGAAGAACTGGGATACCAGCTTAGCATTGAATATGAACCGAGACACGAAGAAAATGTCCAAAGGAAGAGAGATGTAAACACGATTATCAGCAACACCAAGTCAATTCTCAAAGATATACACACATTTACAAACGCGAGCCCATTAAGGAATGTAGTCGGTGCAAATTTCATATGCCATTTATGCCCTATGGGATTCCCTGATTCTGGTGAACTAAAGAGACACACACTGGACGAGCACCTATCGAAAAATATCGATGATTTCATCAATGAGTTATTCAGTGGCAAAATAATACCAACAATCAAATTGGATATAACATCTCTGAAATGCAAATGCAATGCCAATCTCAATAGTTTAGATGAACTATTTGAACATTTAGTTGATACACATAAACGTAAATTGCACACCGatgttaaaaacataataatccCATTCAAATTCGTTACAAACAACTGGACATGTTGTGTGTGCGATAAGGAATTCGGTACATTCAAAACATTATTGGAACACATGAATACACATATCACAAACTACACATGCGAATTGTGCAATACGACCTTCATCACATGTGAAAGATTGaaaatacatatgaaattCAGCCACGACGTAGGCTCGTTCAAATGTAATTTCTGCCCGAAAGTGTTCAATACAAAACTGAAAATGTATTACCACGAGAGGGGTGTACACACGAAGaagaacaaaatcaaaaactgCGAACACTGCGACGAACGATTCGAAACACTGTGGGAGAGACAGAAGCATCAGTTCAAAAAGCACGGTGTGGCCGTTTCCAAATTGACCAAGGTCACGTGTAGCGTTTGTGAACGCGAATTTTCCGATCAGAGCGCGCACAATTTACATTTTCGTAGGTGTCACCTGTTAGAGAAGAATCACAAGTGCGGTTACTGTGATATGAGGTTCTTTGACACCTCGAGTTTGAGAAAGCACATCTATAAACATACCGGCGAGAAGAATTATCAATGTCAGGTGTGTTCGAAGTCGTTCTCCTTGAAGAATACATTGACAGAACATATGCGGATACATAATAATGATAGGCGGTATAGGTGCGAACATTGCGGGCAGACATTTGTACAGCGGTGCAGTTGGCGTGGACATTTGAGGACGAAACACGGTgttggtgataaaaatatatga
- Protein Sequence
- MKIDIEKEQNEADLKKLLTAYTRTNFKEIVLCTNASPIRSKVGREYLCCFCSDRFKKPASLKSHTHKHLAGLENQRNERILKQVIDGKNRVPFIKLDITKLTCKLCGMLINNYDDVIKHLIETHKRIIHQNIKNLIVPFKFDIDASVCCVCAKEFASFKCLVEHMNTHTSNYVCDLCSATFIAMDRLKSHIKLRHALGEFKCHSCSKMFNMKVKLYQHERRMHRQAKQVKKCDYCNETFDTQWAKQKHQFKYHGVTVAVLKKVTCELCIREFPNVGFKEELGYQLSIEYEPRHEENVQRKRDVNTIISNTKSILKDIHTFTNASPLRNVVGANFICHLCPMGFPDSGELKRHTLDEHLSKNIDDFINELFSGKIIPTIKLDITSLKCKCNANLNSLDELFEHLVDTHKRKLHTDVKNIIIPFKFVTNNWTCCVCDKEFGTFKTLLEHMNTHITNYTCELCNTTFITCERLKIHMKFSHDVGSFKCNFCPKVFNTKLKMYYHERGVHTKKNKIKNCEHCDERFETLWERQKHQFKKHGVAVSKLTKVTCSVCEREFSDQSAHNLHFRRCHLLEKNHKCGYCDMRFFDTSSLRKHIYKHTGEKNYQCQVCSKSFSLKNTLTEHMRIHNNDRRYRCEHCGQTFVQRCSWRGHLRTKHGVGDKNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -