Lari015271.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- Zbtb11_1
- Assembly
- GCA_951799465.1
- Location
- OX637283.1:1764044-1765900[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0024 0.15 12.6 3.0 1 23 51 73 51 73 0.98 2 16 0.041 2.5 8.8 0.0 2 23 101 123 100 123 0.91 3 16 0.00048 0.03 14.9 5.2 2 23 144 166 143 166 0.95 4 16 0.053 3.3 8.4 1.5 2 23 172 194 171 194 0.93 5 16 0.0021 0.13 12.8 1.3 1 23 199 222 199 222 0.95 6 16 0.22 14 6.5 1.8 2 23 225 247 225 247 0.95 7 16 4.8 3e+02 2.3 2.4 2 20 254 272 253 274 0.83 8 16 0.0024 0.15 12.6 0.5 1 23 326 349 326 349 0.92 9 16 0.5 31 5.4 0.0 3 23 378 399 376 399 0.94 10 16 4.9 3e+02 2.3 6.6 2 23 421 443 419 443 0.85 11 16 4.2e-05 0.0026 18.2 2.1 1 23 448 471 448 471 0.93 12 16 0.051 3.2 8.5 4.9 2 23 476 498 475 498 0.90 13 16 0.00022 0.014 15.9 0.6 1 23 503 526 503 526 0.97 14 16 6.2e-06 0.00039 20.8 4.7 1 23 530 553 530 553 0.97 15 16 6.1e-05 0.0038 17.7 1.2 2 23 560 581 559 581 0.96 16 16 0.00063 0.04 14.5 2.7 1 23 587 609 587 609 0.97
Sequence Information
- Coding Sequence
- ATGGTGGAGTTGAAGAGGATTGAAGCAAGCAATTTGTTCACAGATGATAATCCGGATGGCATTGAGCCCTATGCGTCTGTGAAGAGAAGGAAAAACATGCAAATACTATTCAACAGCACAACGGTTATACCATTTAAATGGCGCGGCAAATACATATGTTTCTATTGTCCGAATGAGTTTTCGGACTGTTTGGATTTGAGGAAACACACCAAATCACACGGCCAGTGCACCACTCAGGACTACTCCCTGAAAATGGTGAAAGGGAATTGTGTCGAGATCAAACTAGACATATCCGTTATAGAATGCGAGATTTGCAATGAGAATTTCCCGAGTCTGAAGGAGATCATCGATCACCTGATCGGTAAACACGATTTGGATTACGACAGTACACTGGACACGCCGATGACACAGTTTCGCCTGTCCGATTTGAAATGTCAACACTGCGACAAGGATTTCACGTATTTCGTGTATTTGCGGAGGCATTTGAAACACGCACACCCGCACACCAATTGTGCGTGCGACGATTGTGGTGCGGCGTTCAATTGTAAGCGTGACTTGGTGTTGCACCTACGCGATTATCACAGGTGCGGCGGTTACGCGTGCGACGTGTGCTTTGTGGTGTTTGAAACGAAGCGCGCTCTGAAAGCGCACAAGAACCAATGTCACTTTCGCAAGTGTGTCTACTGTTGTGGGAGCTTTGCGTCGTTCACGCTGCTTCAGAGGCACGTACGAAGCGATCATTCGCAATTCAATAGCGATAAGTGTCCGTTTTGTGAGAAGAAGTGTCATTCGAAGCAAGGTGTTGGGCAGCATGTGAAGAATTGTAAATTTAACGTCATAGAGAAGACACCCGCGATGTTGCCATCGGAGAACGCAATAGAACCGAGAAAGAAACAGGATTTGACCCAGATCCGGAGGAATATCATTGACGTGTTGAATATGACCAGCGTGGTGCCATTCAAGTTCTTCGGCAAGTTCTCGTGTTTCTACTGCTCGTTGCGTTTCGCGGATTTCGAGGAGCTGAAGGCTCACACGTCCGCCGAGCATCCGTGTTGCGATACGGACACGCCCAGCATCAAGAAGTGTAAGGGCGAACGGACAACTGTCAAAGTTGACGTATCGGCACTCGCGTGCAGATTATGCAACGAGACCGCCAAAGAGTTTGACCAACTGCTCGATCACATTATCGTCGAGCACAGTGCACGTTACGACAAATCGCTGATCAGCTTTGAGACGTTTCGTATATACGCTGATAAGTGCTCGTGCGCGCACTGTCCGAGTGTTTTTCGTTATTTCACGACGCTATTGCGCCACTGCAACTCGGAGCACAGCGGCACGTGTCACGTGTGCGATACGTGCGGGCGCAATTTCAAAAAGGTGTCGAATCTGACGGCGCACATTGCGCACACGCACAAGGGTGCGTGCGAGTGTGCCATATGCGGTATACAGTACAGGAATCAGTGGTGTCTCAATCGTCACAACGCGAAATGTCACAACGCGAAGGAGTTTAAGTGCCCCAATTGTCCGGAGCAGTTCCAATCTCCGTATCAGAGGCAGAAGCATCAGATCAAAGCGCATGATATAGGTCATAAATGCAGTTACTGCGGCCGCATGTTCACGAGGAACTCCTTTATGCGCGATCACATCAGACGTACGCATCTGAAGGAGAAGAATATGGAGTGCTCGATTTGTGGTGAGAAGTTTTTCGACAATCACCTGTTGAAGCTCCACATGGTGAAGCACGAGGGTGTTAGGCGGTTCAATTGTTCGGTCTGTTGCAAGACGTTCATGCGACGTAGCAATCTGGCGTCGCACATGGGCATGCATAAGAAGTATGGGCATGTGAACGATCAGTAG
- Protein Sequence
- MVELKRIEASNLFTDDNPDGIEPYASVKRRKNMQILFNSTTVIPFKWRGKYICFYCPNEFSDCLDLRKHTKSHGQCTTQDYSLKMVKGNCVEIKLDISVIECEICNENFPSLKEIIDHLIGKHDLDYDSTLDTPMTQFRLSDLKCQHCDKDFTYFVYLRRHLKHAHPHTNCACDDCGAAFNCKRDLVLHLRDYHRCGGYACDVCFVVFETKRALKAHKNQCHFRKCVYCCGSFASFTLLQRHVRSDHSQFNSDKCPFCEKKCHSKQGVGQHVKNCKFNVIEKTPAMLPSENAIEPRKKQDLTQIRRNIIDVLNMTSVVPFKFFGKFSCFYCSLRFADFEELKAHTSAEHPCCDTDTPSIKKCKGERTTVKVDVSALACRLCNETAKEFDQLLDHIIVEHSARYDKSLISFETFRIYADKCSCAHCPSVFRYFTTLLRHCNSEHSGTCHVCDTCGRNFKKVSNLTAHIAHTHKGACECAICGIQYRNQWCLNRHNAKCHNAKEFKCPNCPEQFQSPYQRQKHQIKAHDIGHKCSYCGRMFTRNSFMRDHIRRTHLKEKNMECSICGEKFFDNHLLKLHMVKHEGVRRFNCSVCCKTFMRRSNLASHMGMHKKYGHVNDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -