Lari015527.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637283.1:4373251-4375781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.2 12 6.6 0.5 2 23 99 120 98 120 0.94 2 13 0.0032 0.2 12.3 0.2 1 23 168 190 168 190 0.96 3 13 0.028 1.8 9.3 0.2 1 15 195 209 195 218 0.78 4 13 0.0014 0.085 13.4 1.5 1 23 224 247 224 247 0.96 5 13 6e-05 0.0038 17.7 2.6 1 23 254 277 254 277 0.98 6 13 4.8e-06 0.0003 21.1 3.4 1 23 284 306 284 306 0.97 7 13 1.1e-05 0.00071 20.0 0.7 1 23 312 334 312 334 0.97 8 13 0.0001 0.0063 17.0 1.0 2 23 338 359 337 360 0.92 9 13 0.014 0.86 10.3 1.5 1 23 435 458 435 458 0.96 10 13 0.03 1.9 9.2 3.9 2 23 527 548 526 548 0.98 11 13 4.6e-05 0.0029 18.1 0.5 1 23 552 574 552 574 0.98 12 13 0.021 1.3 9.7 0.1 1 21 608 628 608 631 0.89 13 13 0.00042 0.026 15.0 0.1 1 23 638 661 638 661 0.98
Sequence Information
- Coding Sequence
- ATGCTTAAACAGAATTTTCTATTTCTAGGACAAGGGACGAAGTATCAGAGAAGCAAAAGCGCCGAAGCGCGCCTATCCATGAAAAAGAATGCGACGACATTGTTAGAATGCTGGCGCATGATACCGTTTCGATGGAAGAAGAATCATTTCAAATGCGCTTTCTGCGAGGGTAACTTCACGTGTTGTGTTGAATTGCGTGACCATGTCACTGTGTGCTCCACCAACCACAGCGTTAAAGATATTTACAGCAAGTTCAAAGAGATGTCGCTAATAAATGTCGACGTGACGAACTCTGTGTGCCGTCTGTGCCAGTGTCCATTCTACAGCGCACCACAGATGAGACAACACGTCATAGAGCACGGTCTGGATTTCGATAGCTCACATCCCGACGGCGTTCTACCTTTCACACTCGATAATAATCTGTGGTGTTGTATCATATGCCGtgataaattcaataatttcctTAAACTTTACGAGCACATGAATGTCCATTATCAGCATTATATATGCTCTACCTGCGGGAAGGGTTATATGACAGCGCCGAGGTTGAGAAAACATTCAGAGGTCCATTTGAAGGGCTCATATCCGTGTGACAAATGTGGACGAATGTTCACAATGCGTGCGGCAAGGGATTATCACAAGGCGAATGTACACGCGAAGGGCCCGAGATACGAATGTCCGCATTGTGATATGCGATTCTCCGGTTATTACGACAGGATGAACCATTTGAATTTAACGCACCGTGCGAAAGAGGTCACATACGAGTGTTCGCACTGTGAGAAAACGTTCAAAACGAGCGGCCAGCGATCCGTGCACGTGAGACGCGAACACTTCCCGCAGGAGAGGAGTTACAATTGTGATTATTGCGAGTGGCATTTCAAGACGAATTACGAATTGAAGCGTCACATGGTGAAGCACAATGGTGAGAAGAAGTTCGCGTGCGGTGTGTGCGGAAAATGTTTTCCGCGTGTCAGAGGGCTCAAGACACATTTGAAAGTGCACGATGATCTATGTTGTAGGCTGTGCGGGGAAACGTTTGTGCGAAAGGAGGCTTTGATTGCTCATATAAGCGGACACCATCCCGATTCTGATGTGTTTGCTGGCTCCGCTAATGCGGATCGGGTCAAGGGTAGGAAGTTGAAAGAGCACGTGAGCGCACGTCAAATGTTACGGCGACGTCGTGCGAACAACGAACACCCCGAGGAGTCCGACAGACGCATCGCCAAGACAATGATGCAGAGGAATGCGCTAACTCTCCTGGAATGCTCCACCGCTTGGCCGTTTCGCTGGTTTCGCAGTGCGTTTTATTGTTCGCACTGTGATGTTAAATATCACGAGGCCGAAGCTTTGCGCGAGCACGTACGCGCGAATCATTCGCATCAGCGGCCAACGAAAAAGCTGTTCGCGAAGCTCACCGAGAACAATATGCTCAAAGTTGACGTTGCCGACTTGAAGTGTAAGCTTTGCGGCCTCGTGAACACAATTGACGCACTCAAAGAGCACTTGGTCTGTGTGCATAAAAGGAAACTGTACGTCAATTATAGCGATGGTATACTGCCGTTCAATCTCAGCACAAACAAATGTCCAAAATGTCATGTGAGTTGTGTGTCGTTCGCGAAAATGAACGAGCACATGAACAGCCATTTTAGGAATTACATTTGCGACGCGTGCGGCAAAGGTTTCGTTTCCAAATCGAGGTTCAGGGCTCACACGCAGACCCACGAGGTTGGTAGGTTTCCGTGCGGTGTGTGCGACGTGGTTATGGAGACGAGGGCGTCGCGTGTTTGTCACAGGTTGAAGGTGCACAACAGAGGTGTTAGGTACGCGTGTCCGCGGTGTTCGGAAGTGTTCACGAAATACAGCGCGCGCGTCAAACATTTGGTTGACGGGCATGGACAACGCAAGGTCGATTATGTGTGTGATAATTGTGGGGTGGTCTTTGAGAGTAGTGGCAAAAGGGCGGCACATTATAGGACCTCGCATAAGATTGGAAAGAAATGTCTGAATGTTTGCAACGAGAAACGTGTGGATGAGAatgttttatag
- Protein Sequence
- MLKQNFLFLGQGTKYQRSKSAEARLSMKKNATTLLECWRMIPFRWKKNHFKCAFCEGNFTCCVELRDHVTVCSTNHSVKDIYSKFKEMSLINVDVTNSVCRLCQCPFYSAPQMRQHVIEHGLDFDSSHPDGVLPFTLDNNLWCCIICRDKFNNFLKLYEHMNVHYQHYICSTCGKGYMTAPRLRKHSEVHLKGSYPCDKCGRMFTMRAARDYHKANVHAKGPRYECPHCDMRFSGYYDRMNHLNLTHRAKEVTYECSHCEKTFKTSGQRSVHVRREHFPQERSYNCDYCEWHFKTNYELKRHMVKHNGEKKFACGVCGKCFPRVRGLKTHLKVHDDLCCRLCGETFVRKEALIAHISGHHPDSDVFAGSANADRVKGRKLKEHVSARQMLRRRRANNEHPEESDRRIAKTMMQRNALTLLECSTAWPFRWFRSAFYCSHCDVKYHEAEALREHVRANHSHQRPTKKLFAKLTENNMLKVDVADLKCKLCGLVNTIDALKEHLVCVHKRKLYVNYSDGILPFNLSTNKCPKCHVSCVSFAKMNEHMNSHFRNYICDACGKGFVSKSRFRAHTQTHEVGRFPCGVCDVVMETRASRVCHRLKVHNRGVRYACPRCSEVFTKYSARVKHLVDGHGQRKVDYVCDNCGVVFESSGKRAAHYRTSHKIGKKCLNVCNEKRVDENVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -