Lari004258.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637265.1:2995547-3001286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.024 1.5 9.5 4.1 1 23 265 287 265 287 0.99 2 12 0.01 0.64 10.7 6.9 2 21 295 314 294 316 0.94 3 12 0.072 4.5 8.0 1.3 1 23 320 342 320 342 0.93 4 12 2.5e-06 0.00016 22.0 1.6 1 23 347 370 347 370 0.98 5 12 3.1e-05 0.002 18.6 1.9 1 23 374 397 374 397 0.93 6 12 0.91 57 4.5 1.0 3 21 413 431 412 436 0.90 7 12 0.00011 0.0072 16.8 0.2 3 23 446 467 446 467 0.98 8 12 0.05 3.2 8.5 1.2 2 23 491 513 490 513 0.96 9 12 6.7e-06 0.00042 20.7 0.5 1 23 524 546 524 546 0.98 10 12 1.4e-06 8.7e-05 22.8 2.9 1 23 552 574 552 574 0.99 11 12 0.0025 0.15 12.6 4.3 1 21 580 600 580 602 0.94 12 12 0.0011 0.072 13.7 2.6 1 23 608 631 608 631 0.96
Sequence Information
- Coding Sequence
- ATGGAAAAATTAAAAGCTTGTAGGATTTGTTTACAAAGAGACCTGAGACTGAAAAGTATACAATCCAACTTTTTGGGCCAGTATTACGAAATTATTACGGGATTAAACCTAAATGAGACTGGATTACCcggttatttttgttatgaatGTGCAGCTTTGTTGAAGAAATTCTACATATTTAGACAGAAAAGCCTTAAAGGCTTAGAAGTGTTACAGGGTGTTTTGCAGACATATGGCAagATTACAGAAGAGACTATGCTTAAAATAGAAAAGAACAGCTCCTATACAAAATCTGGCTTGAGTATTTTCAATgggttttcaataaatattttacctgATGGAGATAaagatacaataataaatgatagTGTATCAATGGAAACCaacaatgaattaaaaaatattgatgctGCCTtagatttgtttgaattagTTAAAGAAGAGCCTTGTGAAAAACTAAGTAGTGATATTGATGAAAGTTATGAAGATTGGCTAAGTGATGATGAACCTCTTGCAGTACATAAGAGTATAAAAAAGAAGATTCAAAAGAAAAAGTTAGTAAAAGATGAAATAAAGGAAGAAGCATTGGAGCTACCAAAAatctcaaaattaaaaaaacctataaaaGGGAATAAGAAACCAGTTAAACTTCTAAGAAAAGATGTAATTCAGCCTAAACAAATACAAGATTTCAATTTTGAGAACTATGTTGATGTCATCACATTaacggAAGAAGAACAAAAAGAGGAGATAAGTCGACGTAAGGAGTCAGAAAATTACCAAAGCGCACCATTTAAATGCGATTTGTGTTTTAAAGTGTTTCTCGATACTCAAACATGGCAACACCATATGAAGAAACACGACGTgTCATCGGGCCGTGTGCAGTGTGAAATATGTAAGTTGCGTTTTAAGTCGCAGCATTGTCTTAACAAACACATAATGTGTCACGCCAAGAAGTACAAATGCAAATATTGTTCCTACGTTTCGCGAAATacaacACAAGCGTGGAATCACGTGTTTTGGCATCAAGGGGTTACGTATAAGTGTCCGCACTGCGATGAAATGTTTTCacAATGGACATCGTACCTCAGCCACGTGCGTATAAAGCATCCTTCGGACTACATCTGTCCTCATTGCGGCTACTCCTTCGTCTCACAACACGGCCTTAACATGCACAAGAGCTTAATGCACCGTGGTGTAGCTGAACTGAATGAGGACAACAAAGATCTGCCGTATTGCTCATCCTGCGACATGAAGTTCGCGTCGGAAGAGGCACACAAACGGCACATGGTGACtgcaaaaaaacatatactGGACTCTGAGAAGAAGAATGGGTGTCGTGAATGCGGTGAAAAGTTCTCTAGTATTGACGAGTTACGAGCGCACTCGCGTACTGCGCACACGCATAAGGCGTGTGAAGCATTACTTCAACGATACAAACGGAACTCGGATAGTCGCACTTGGCCCACCAAATGCCCGCATtgCTCTGAGGAAATAGCAAATGCCCGTCAATACTGGTCGCACTTTAGACGGAACCACCCTGATGAAGTTTATCCCATAGagaagaaatatatttgtgacATCTGTGGCAAGTCATTCCGGGGAAACGCGTTTCTGACATATCACAAGCGTATCCATACAGGCGAAAAGCCTTTTAAGTGCAAGGAATGTGATAAAAGTTTCTTCAACCGAACGAATCTTTTAATGCATGAGAGAACTCATTCTGAGCAGCGGCCTTATATATGCTGCGTTTGTGGAAAGGGCTTTAAGAGCAAAGGAGCGCTTGATAGACATTTCCGGTGTCACACGGGCGACAGACCGTACAAATGCGAACTTTGCGGTAAAGCCTTCGCCCAGTCAAACAGTTGTAAGGTCCACGTACACACAGTCCATCTCAAACAACCCTCGCCATACATTAGCCGCGCCAGACTCCAGAAAAGGGTTAAGAATTTAGCAACTGACAAACAGACTGTATTATATTGTacgtga
- Protein Sequence
- MEKLKACRICLQRDLRLKSIQSNFLGQYYEIITGLNLNETGLPGYFCYECAALLKKFYIFRQKSLKGLEVLQGVLQTYGKITEETMLKIEKNSSYTKSGLSIFNGFSINILPDGDKDTIINDSVSMETNNELKNIDAALDLFELVKEEPCEKLSSDIDESYEDWLSDDEPLAVHKSIKKKIQKKKLVKDEIKEEALELPKISKLKKPIKGNKKPVKLLRKDVIQPKQIQDFNFENYVDVITLTEEEQKEEISRRKESENYQSAPFKCDLCFKVFLDTQTWQHHMKKHDVSSGRVQCEICKLRFKSQHCLNKHIMCHAKKYKCKYCSYVSRNTTQAWNHVFWHQGVTYKCPHCDEMFSQWTSYLSHVRIKHPSDYICPHCGYSFVSQHGLNMHKSLMHRGVAELNEDNKDLPYCSSCDMKFASEEAHKRHMVTAKKHILDSEKKNGCRECGEKFSSIDELRAHSRTAHTHKACEALLQRYKRNSDSRTWPTKCPHCSEEIANARQYWSHFRRNHPDEVYPIEKKYICDICGKSFRGNAFLTYHKRIHTGEKPFKCKECDKSFFNRTNLLMHERTHSEQRPYICCVCGKGFKSKGALDRHFRCHTGDRPYKCELCGKAFAQSNSCKVHVHTVHLKQPSPYISRARLQKRVKNLATDKQTVLYCT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203489; iTF_01205154; iTF_01204304; iTF_01205916;
- 90% Identity
- -
- 80% Identity
- -