Basic Information

Insect: Leptophobia aripa
Gene Symbol: -
Assembly: GCA_951799465.1
Location: OX637260.1:4726171-4731261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.034 2.1 9.0 0.3 2 20 198 216 197 220 0.91

2 11 0.43 27 5.6 0.1 5 23 229 247 228 247 0.93

3 11 0.019 1.2 9.8 3.1 1 19 272 290 272 295 0.91

4 11 0.0025 0.15 12.6 1.3 2 23 329 350 328 350 0.96

5 11 1.7e-05 0.0011 19.4 0.7 1 23 358 380 358 380 0.98

6 11 9.4e-05 0.0059 17.1 0.4 1 23 389 412 389 412 0.97

7 11 0.00015 0.0093 16.5 0.3 1 23 418 440 418 440 0.97

8 11 7.3e-07 4.6e-05 23.7 3.5 1 23 446 468 446 468 0.99

9 11 0.00046 0.029 14.9 0.7 1 23 473 495 473 495 0.98

10 11 4.5e-06 0.00028 21.2 2.5 1 23 501 523 501 523 0.97

11 11 7.8e-05 0.0049 17.3 0.3 2 23 530 552 529 552 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.034	2.1	9.0	0.3	2	20	198	216	197	220	0.91
2	11	0.43	27	5.6	0.1	5	23	229	247	228	247	0.93
3	11	0.019	1.2	9.8	3.1	1	19	272	290	272	295	0.91
4	11	0.0025	0.15	12.6	1.3	2	23	329	350	328	350	0.96
5	11	1.7e-05	0.0011	19.4	0.7	1	23	358	380	358	380	0.98
6	11	9.4e-05	0.0059	17.1	0.4	1	23	389	412	389	412	0.97
7	11	0.00015	0.0093	16.5	0.3	1	23	418	440	418	440	0.97
8	11	7.3e-07	4.6e-05	23.7	3.5	1	23	446	468	446	468	0.99
9	11	0.00046	0.029	14.9	0.7	1	23	473	495	473	495	0.98
10	11	4.5e-06	0.00028	21.2	2.5	1	23	501	523	501	523	0.97
11	11	7.8e-05	0.0049	17.3	0.3	2	23	530	552	529	552	0.95

Sequence Information

Coding Sequence: ATGGCTttagacattaaaaaaatatgtcgcCTCTGTGCAAAAAAGGagcatattttaaaagatttaaacgatgaaaataataaaaatatacttaaaattatacaagaattattacaaataacaatATCTGATAATGACACACTTCCAACACAAATTTGTctaaattgtgaaaataaaatggtATCATTTCAACTATTTGTTTTGGAATGTTATAAAGTTCAAGAAAATTTGCAAAAAAGGTGTGCAAGAGATTATGAAAACCTTGAATTCAAGTTAAAtgatgatttaaattatagaataactgaaattaaatCTGAGGTTAAAATTGAAATGGATGAAATTGTAGCTTCACTTAATAATGAAGTAACCTACTCTGATATTGATGGCGATGATATGAACTACGACAATGACAACAATGAATGTGAAAGTGATAATAATACTAGTGATGGAGCTACACTTGCatctttaaaacaaacaaaagttAAGCAAGCTTCAAGTATAAAACCAAGAAAAATGACTGATAAAGATAGGGAAGACTTAGAAAAACTTCTTAAGGATCCTAGagcaaaactaaaaaattttgttaaGATGTCTTGTGCGGAGTGTCCGAAACGAGTTCACTCATGGGAATCATTGCGCAGTCACTATTGGACTGTTCACCAGAAAAAAGTGTACACTTTTTGTATATGCGGCTATGTTTTAACATCAAAGAGTGCTATCTACAGGCATGTAGCTGAACATAAATCTCGGCCTCGGCGAGGTACAAGAAAACCCGCAAATAGAAATTCAATTAAAGTCACAGATCTTATTAGGTTTAATTGCCGGGAGTGTAATCTAGACTTTTCTAGCtggtataaattaaacacacATTGCATGTGGAAGCATAAAGCAACTCCTATAGTGCACTGTAGCTGTGGAATTTCACTTAACTCTAGAACAGTTATGTACAAACACATTCAGGACCATAAAAGTCCTGATGCTTTAcaCTGCGACCAATGTCCGAAATCGGCGAAAACTATTGAGGAACTTCAAAGACATAAGTTAAGGCATATACCCAAGGCTGAGAGGACGTTTCCGTGTTCATCGTGTGATAAAGTGTTTACATCAAAAGATCTAGTCAAATCACACGAAAGGTCGCATGTGCCGATAGAACAGaggaaaatatatgaatgtgATGTTTGTAATGAGAAattcACTACACGTTCATCAGCAGTATCCCACAAGCGTATAGTCCATGAGAAAATAAAGAGCTACGTATGCGATCAGTGTGGGTATGCGTGTGGCACTAACGGCGAGTTGAGACAGCACAGAGCAATACACAGTGACGACAAACCTTACACATGCCGGAAATGCTCTAAGGCattcaAAACGTACTCAAATCTCAAAACACACATGGACACACACGAAGAAACTTCGTATGTGTGCTTCGTGTGCAGTCGTGTACTGAACAGTAGACGCACGTTAAGAAAACATCTCCTAGTCCACGATGAGAAGTGCTCACACGTGTGCAGCTATTGCAATAAGGCTTTCAAGCGCCGACAGActttaaaggTTCACCTTGCAATGCATACAGGCGATAAACCACTATCGTGCAAGTGGTGCGATGAGCGGTTCGCGTACGCGTCCACGTTGCGCTCGCATCGATTGCGTGCACATCCCGACAAAATGTCAGTACAACTCAATGACTGTTATTCCGTACAAGTTTCTcagGATTATAACAAAACCGATTCGACCGCTTTAAATGTCCCGAAGAGCAACATACAGTAA
Protein Sequence: MALDIKKICRLCAKKEHILKDLNDENNKNILKIIQELLQITISDNDTLPTQICLNCENKMVSFQLFVLECYKVQENLQKRCARDYENLEFKLNDDLNYRITEIKSEVKIEMDEIVASLNNEVTYSDIDGDDMNYDNDNNECESDNNTSDGATLASLKQTKVKQASSIKPRKMTDKDREDLEKLLKDPRAKLKNFVKMSCAECPKRVHSWESLRSHYWTVHQKKVYTFCICGYVLTSKSAIYRHVAEHKSRPRRGTRKPANRNSIKVTDLIRFNCRECNLDFSSWYKLNTHCMWKHKATPIVHCSCGISLNSRTVMYKHIQDHKSPDALHCDQCPKSAKTIEELQRHKLRHIPKAERTFPCSSCDKVFTSKDLVKSHERSHVPIEQRKIYECDVCNEKFTTRSSAVSHKRIVHEKIKSYVCDQCGYACGTNGELRQHRAIHSDDKPYTCRKCSKAFKTYSNLKTHMDTHEETSYVCFVCSRVLNSRRTLRKHLLVHDEKCSHVCSYCNKAFKRRQTLKVHLAMHTGDKPLSCKWCDERFAYASTLRSHRLRAHPDKMSVQLNDCYSVQVSQDYNKTDSTALNVPKSNIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205926;
90% Identity: iTF_01202665;
80% Identity: -