Lari015171.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637283.1:934487-941667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.01 0.63 10.7 0.0 3 23 110 130 108 130 0.97 2 15 0.003 0.19 12.3 2.1 1 23 216 238 216 238 0.99 3 15 4e-05 0.0025 18.2 1.1 1 23 244 267 244 267 0.97 4 15 0.38 24 5.7 3.9 1 23 272 295 272 295 0.93 5 15 7.8e-07 4.9e-05 23.6 0.3 2 23 445 466 444 466 0.98 6 15 0.0002 0.013 16.0 1.5 1 23 472 494 472 494 0.98 7 15 0.64 40 5.0 9.7 1 23 542 564 542 564 0.96 8 15 0.039 2.4 8.9 0.4 1 23 571 593 571 593 0.96 9 15 0.0038 0.24 12.0 2.7 1 23 599 621 599 621 0.98 10 15 9e-05 0.0057 17.1 2.0 1 23 627 649 627 649 0.97 11 15 0.00097 0.061 13.9 3.0 1 23 658 680 658 680 0.98 12 15 0.0001 0.0065 17.0 0.6 2 23 726 747 726 747 0.97 13 15 0.0015 0.097 13.3 2.7 1 23 764 786 764 786 0.96 14 15 2e-06 0.00013 22.3 0.7 1 23 792 814 792 814 0.98 15 15 4.1e-05 0.0026 18.2 5.2 1 23 820 843 820 843 0.98
Sequence Information
- Coding Sequence
- ATGGTGGAACCAGCTGTTTCTGATGTGGATCCTTTGGGCGCCTTTTCGTACCTATCTCAATACCATTATGGTCAGTTTCCAAACACAAACCCAACATATCAGTTTGCTGTCAAACCTGAAGAATTCTACACATTACCTCAGTGTAGTACTTCTAATACCAGCTATAACAATACAACACCTCAAGCTTCCACACAGAATAAAACCCAGCAAGAAACAAGTGTACACTATGATATAAAACCTCTCTTAAAAACTAACAGTAGagtgaaaaaagaaaaaaaaagtttaatttctcAAAAAATTACTCAAGAAGGCTATCCATTCTATGGCTGTGCAGTTTGTAATATAAGTTTTGCGACGCTTAGAGAATTAGACACACATGTTGCAACACACAAGGGTAGGACAACGAGTTATGATTTAAGAGTGAAAAATGCattgaaaaagaaaaggttaaaaaaggaacagaaaaaattaaagaaaatgaagaaAGAAATATCCGACATTGATATCAAACCTGAAGATGGTTATATAGGTAACGAGAAAGCAACAGAATTTGCTTTAAATAACAACGATGTAGGAAACAAAAGCAAAACGGAGAAGACAAATAAACAAGAAATCACCGCAGACTCTGCAAATTTGGAGaagatttataaatgttttgcGTGTCAGAAACAATtcatattaagttattatttaaagctaCATGTTAGATCACATACAGATGAAAAGCCTTACACATGTGAACAGTGCGGACAATCCTTTATAACGGCCAGCAAACTGGGACGTCACAACAAGAGATTTCATTTGTCGGTTCAATATCAGTGTAGGATATGTTATAGGAAATTTTACAGaTTTGAAATTCTAACGCGACATTTCGATAAGAAACACGCTGAAGATAAATTAGAAGGCGAGCCGTATGaTTTCAACGCGATCTTGCCATATTTAAAAGAGTTAGAAGAGCAATTGCGTGAGAAACAAGAGATGGAGAAGACAAAGTCACCGGATGATTTGTGGTCCAACGAATGGCCGGTCGCGAGCCAACACGAGAAGGATGTAATAAAAGAAGAGTGCAAGAAAGAAGGAGAAGATAAGATTGAAATTGAAGTTGTTAAAGTGCCTATGGACGATGTGGAGATTAAAGAGGAGGTTGAGGATGTTGATTATAATGATAATGGGACGAGTGATAATGTTAATGATATTGGGAataatgatagtgttaatgataatacaaataatgacGATGTTAGTGCTGAtaaCGACACGGACGAGGACTATTTCCCATCGAACACGTGGCTGAAGCCGGAACAGCCCCTGGAGGTGATAACCAACGGCGTCAAGTGTCCGGTGTGCGACAAGAGTCTCAGCACAGCGTCGTACATGCGCGTGCACATGCGGACGCATACAGGCGAACGCCCGTTCAAATGCTATATATGCGACATGGGCTTCATCACGGCGAGCAAGATGCACAGGCACGTGCTGACGCATCCGGAGTCGTTGAAAGatGACGTAAAATCAGAAACTGAAAGACACGAGAAGACAGATGAGAACAgAGAGAGAGTGAAAAAAGCCGTCAAGAAATTGTCAAAGAAACTTAACGAGAAGACCAAGAAGTACAGGAAGAGGCCGCACGCCTGCGAATACTGTCACAAGCGATTCTTACATCTTCATACCTTACAGATACACAAGAAATCCCATGAAGGCGAAGAGATCAAATACAGGTGCCACTACTGTCTCCTTGAAGTTGATGATGAGGAGAATCTGAAGATTCACGAAGTGAGACATACGGGACCAAAGCCCTACCAATGCACGATATGCGACAAGTTGTATAAGAAGAGAGAGAGTATGCTTTACCATAGAAAGAACCATAAACCGGAGAGAGAGTTCATATGCGATATATGCACGAAGTCATTCAACGCTCAGTGCAAATTGCAGAGGCATATAATAAGTCATAGCGTCGACAAATATATGCTGAAGTACGAGTGCCCCGTCTGCGCGCACATGTTCAACACCAAGTACCACATCCAGATGCACCTGTCCACGCACCAGAGGGAGGGAGTGATCCAAGAGGAGAATCGCAACGAAATATTAGCGATGGTGTTGCAGAACGCCCGCCGCATCCCGCGCAAGGGCGAAGCGCACAATCTGACCGACGTGATACCATCGGACGAACGCAGCCGCGTCTGCAACATTTGCGGCGAGGTGTTCCAACACTTCTACTACCTGGAGGAGCACCTCAAGAGTCACGGCTCGAAAATCGCAATTGAGAACACGGACAAAGTGGAGGAGAAGAAGTACATATGCCCCGTGTGCAATAAGGGTTTCAAACTGCATTACTATTTGAAGTTGCACAGTTTCACGCACACGAAGGAGAAGCCGTTCATTTGCCAGCAGTGCGGGAAGGGCTTCATCACACGGGGCAAGCTGAAGCGCCACTTGGAGACGCACACCGGGCTCAAGAAGTACCAGTGTCATATATGCTGTAAGTTCTTTACGAGGCCGAGTTATTTGCGAGTTCACGTGAGGACGATACACGGTGCGCAGTTGGTTAGGTTGGGGCTTAGGACTTGA
- Protein Sequence
- MVEPAVSDVDPLGAFSYLSQYHYGQFPNTNPTYQFAVKPEEFYTLPQCSTSNTSYNNTTPQASTQNKTQQETSVHYDIKPLLKTNSRVKKEKKSLISQKITQEGYPFYGCAVCNISFATLRELDTHVATHKGRTTSYDLRVKNALKKKRLKKEQKKLKKMKKEISDIDIKPEDGYIGNEKATEFALNNNDVGNKSKTEKTNKQEITADSANLEKIYKCFACQKQFILSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRKFYRFEILTRHFDKKHAEDKLEGEPYDFNAILPYLKELEEQLREKQEMEKTKSPDDLWSNEWPVASQHEKDVIKEECKKEGEDKIEIEVVKVPMDDVEIKEEVEDVDYNDNGTSDNVNDIGNNDSVNDNTNNDDVSADNDTDEDYFPSNTWLKPEQPLEVITNGVKCPVCDKSLSTASYMRVHMRTHTGERPFKCYICDMGFITASKMHRHVLTHPESLKDDVKSETERHEKTDENRERVKKAVKKLSKKLNEKTKKYRKRPHACEYCHKRFLHLHTLQIHKKSHEGEEIKYRCHYCLLEVDDEENLKIHEVRHTGPKPYQCTICDKLYKKRESMLYHRKNHKPEREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHIQMHLSTHQREGVIQEENRNEILAMVLQNARRIPRKGEAHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENTDKVEEKKYICPVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRVHVRTIHGAQLVRLGLRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205912;
- 90% Identity
- -
- 80% Identity
- -