Basic Information

Insect: Leptophobia aripa
Gene Symbol: -
Assembly: GCA_951799465.1
Location: OX637283.1:4379182-4381731[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00094 0.059 13.9 0.4 1 23 33 56 33 56 0.94

2 17 0.85 53 4.6 1.0 3 21 86 104 84 107 0.87

3 17 0.08 5 7.9 1.7 1 23 129 151 129 151 0.97

4 17 0.00088 0.055 14.0 0.2 1 23 155 177 155 177 0.95

5 17 0.059 3.7 8.3 1.6 1 21 182 202 182 205 0.82

6 17 0.0097 0.61 10.7 2.8 1 23 211 234 211 234 0.97

7 17 3e-06 0.00019 21.8 0.2 1 23 241 264 241 264 0.98

8 17 8.4e-05 0.0053 17.2 0.5 3 23 272 292 271 292 0.98

9 17 0.079 5 7.9 0.8 1 23 386 408 386 408 0.97

10 17 0.001 0.065 13.8 0.7 2 23 433 455 432 455 0.96

11 17 0.00045 0.028 14.9 0.0 1 23 478 500 478 500 0.97

12 17 0.0001 0.0065 16.9 0.2 1 23 504 526 504 526 0.97

13 17 0.00016 0.01 16.3 1.0 1 23 531 554 531 554 0.96

14 17 0.017 1.1 10.0 0.4 2 23 561 583 561 583 0.92

15 17 0.92 58 4.5 8.0 1 23 590 613 590 613 0.93

16 17 0.00017 0.01 16.3 3.9 1 23 619 641 619 641 0.96

17 17 4.4e-05 0.0027 18.1 1.4 1 23 647 669 647 669 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00094	0.059	13.9	0.4	1	23	33	56	33	56	0.94
2	17	0.85	53	4.6	1.0	3	21	86	104	84	107	0.87
3	17	0.08	5	7.9	1.7	1	23	129	151	129	151	0.97
4	17	0.00088	0.055	14.0	0.2	1	23	155	177	155	177	0.95
5	17	0.059	3.7	8.3	1.6	1	21	182	202	182	205	0.82
6	17	0.0097	0.61	10.7	2.8	1	23	211	234	211	234	0.97
7	17	3e-06	0.00019	21.8	0.2	1	23	241	264	241	264	0.98
8	17	8.4e-05	0.0053	17.2	0.5	3	23	272	292	271	292	0.98
9	17	0.079	5	7.9	0.8	1	23	386	408	386	408	0.97
10	17	0.001	0.065	13.8	0.7	2	23	433	455	432	455	0.96
11	17	0.00045	0.028	14.9	0.0	1	23	478	500	478	500	0.97
12	17	0.0001	0.0065	16.9	0.2	1	23	504	526	504	526	0.97
13	17	0.00016	0.01	16.3	1.0	1	23	531	554	531	554	0.96
14	17	0.017	1.1	10.0	0.4	2	23	561	583	561	583	0.92
15	17	0.92	58	4.5	8.0	1	23	590	613	590	613	0.93
16	17	0.00017	0.01	16.3	3.9	1	23	619	641	619	641	0.96
17	17	4.4e-05	0.0027	18.1	1.4	1	23	647	669	647	669	0.99

Sequence Information

Coding Sequence: ATGAAAGACCTAGACGCGATTAAAGCGAAGAGAAAGAATGCGACGTTACTTCTAGAACACACTAGGATATCCCCGTTTCGATGGATGAAGAATCTGTACATTTGCTTCTATTGCGATCGGCAGTTTGCAGATCCGGCTGTATTGAGACACCACGTGTTCGTCGAACATGACGCGGTGACGTCATCTGTCATAAAATACGCGATGTCAAAATTGAAAAGGCATGAACTAATCAAAGTGGATACTAGTGACGTGTGCTGTAGACTATGCAACGAACCAATGGCCGATTTGAATCATCTAAAACGACATTTGGTTGACGCGCACGACAAACCAATAAACTTGAGCGTTATAGACGAAGTGTTGCCCTTCAAAGTGACGAAAGACAGCTTCAACTGCGCGCTATGCGTCAGTACATTTGACGAGTTCAAAACACTGAACCACCACATGAATGTGCACTTTCAAAATTTCATTTGTGAACAATGCGGCACCGGTTTCATAACGCCGGAGCGCCTGCGAACCCACGCGTTCTCGCACGAGAGCGGCTCGTTCCCCTGCGAGTCGTGCGACAAGTGTTTCAGATCTATGAACGCTAGGAACGAGCACTTTGCCAACGTGCACAAACAGGTGCGCAGGCACAGATGTCCGCACTGTCCCGACGCGTTCAGGAATTACTTTCAAAGGAACAAACACATCGCAACGGTGCACGGGCTCAAATTGAAGGAGTTCAAATGTAACCTTTGCCCCAAAGTTTTTACATCGAGTGGGAAATTAGGTGTTCACGTCCGGACTGTTCATTTGAAAATGAAGAGGCATGGGTGTAACCTGTGCGAATGGAAGTTCTACTCCAAGTCGGAGCTGAAGGAGCATATGGTCAGGCATGGCGgAAAGGAAGCAAAAGCGCCCGCAAAGAGGATAACACCACTATTTCAAGTGGCATACGATAGGAGCCTATGTAAGCCACTTGGCACGCTCTtcgatttcaataaaaaaattaagaatctATCCAACCCACCGACCAGTCCACCGCCGGTTGCCATAGACAAAAGTCCACACATTGGGAAGATGAAAGAGCCAATTAAGATATCGGATAACAGACAGAACGCGCTGTTAATTTTCGAGTTATCAACAGCGTATCCCTTCATATATGGCAACAATAAGTTCAAATGTTTCATATGTTCGCAGCCATTTTTGGATATAACGTTGCTGTGTGATCATATGGACGTACACACATTTGCCTCCCTCAAACGGTTGTTGAACAACAAAAAGGAATGCGTGTTAAAAGTGGAAATCAGCCGTTTATCATGCAAAATATGCACGAAACCGATAAACGATTTGGTCGAGCTGAAGCATCATCTAAAGACAATCCACCAGAAACCTATCGATACGGAGCTGAAAGACAACATGATACCATTCAGGCTCGGCACGCGTGAGTCCTTCGCCTGCGTCATATGCGGCCAGAGTTTTATCAAACTACGCCCGTTGGTAATACACATGAACGTCCATTTCAATAATTACAGCTGCGAGATATGCGGCACGGGTTTTATGACGTTGCGTCTATTAAAGACGCACCTCGACGTGCACGAGAGCGGCAGCTACCCCTGCGATACATGTGACAAAGTGTTCAATACATCCCACAAGCGATCTATACATATACGGGGTGTTCATTTGAAACAGTACCCGCGTAGATGCCCAATGTGTCCCGAGAGATTCAATTCGAACTACCGAAGGACGATTCACCTGCAGGACGTGCATAACCAGTCGACCAGAGTGCACAAATGCGAGACATGCGGCCGGGCGTTTCATTTGAAGTATCATTTGATATGCCACAACCGTTCGGTGCACCTGCAGGAGAGGAACCACGTGTGCAAGGTGTGCGCGCAGCGGTTCTGCAATAAGGAGACGCTGAAGCGGCACATGGTGATACACACGGGCGAGAAGAATTACAAATGCGACTTTTGCGGTTTGGCATTTTTGAGGAGGAAGAATTTGAAGGATCATTTGAGGAGTCACGATGTGTGA
Protein Sequence: MKDLDAIKAKRKNATLLLEHTRISPFRWMKNLYICFYCDRQFADPAVLRHHVFVEHDAVTSSVIKYAMSKLKRHELIKVDTSDVCCRLCNEPMADLNHLKRHLVDAHDKPINLSVIDEVLPFKVTKDSFNCALCVSTFDEFKTLNHHMNVHFQNFICEQCGTGFITPERLRTHAFSHESGSFPCESCDKCFRSMNARNEHFANVHKQVRRHRCPHCPDAFRNYFQRNKHIATVHGLKLKEFKCNLCPKVFTSSGKLGVHVRTVHLKMKRHGCNLCEWKFYSKSELKEHMVRHGGKEAKAPAKRITPLFQVAYDRSLCKPLGTLFDFNKKIKNLSNPPTSPPPVAIDKSPHIGKMKEPIKISDNRQNALLIFELSTAYPFIYGNNKFKCFICSQPFLDITLLCDHMDVHTFASLKRLLNNKKECVLKVEISRLSCKICTKPINDLVELKHHLKTIHQKPIDTELKDNMIPFRLGTRESFACVICGQSFIKLRPLVIHMNVHFNNYSCEICGTGFMTLRLLKTHLDVHESGSYPCDTCDKVFNTSHKRSIHIRGVHLKQYPRRCPMCPERFNSNYRRTIHLQDVHNQSTRVHKCETCGRAFHLKYHLICHNRSVHLQERNHVCKVCAQRFCNKETLKRHMVIHTGEKNYKCDFCGLAFLRRKNLKDHLRSHDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -