Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0095 7.9 6.7 0.8 14 42 75 100 65 103 0.81

2 7 0.083 69 3.7 2.6 14 41 104 128 100 130 0.78

3 7 0.00036 0.3 11.2 2.0 3 39 122 154 120 158 0.86

4 7 0.038 31 4.8 3.9 5 38 152 181 148 186 0.74

5 7 0.34 2.8e+02 1.7 6.8 15 41 189 212 176 214 0.83

6 7 1.1e-05 0.0095 16.0 1.5 6 41 209 240 208 242 0.89

7 7 0.013 11 6.3 0.1 19 44 249 271 247 271 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0095	7.9	6.7	0.8	14	42	75	100	65	103	0.81
2	7	0.083	69	3.7	2.6	14	41	104	128	100	130	0.78
3	7	0.00036	0.3	11.2	2.0	3	39	122	154	120	158	0.86
4	7	0.038	31	4.8	3.9	5	38	152	181	148	186	0.74
5	7	0.34	2.8e+02	1.7	6.8	15	41	189	212	176	214	0.83
6	7	1.1e-05	0.0095	16.0	1.5	6	41	209	240	208	242	0.89
7	7	0.013	11	6.3	0.1	19	44	249	271	247	271	0.94

Coding Sequence: ATGAGTCGTAAAGGCGTTGAAACAAACCAATTTTTGATAGAGCCCATAATAAACCGCCGACAAGTGAATCTTGAATGTCAGAAGTCCTCCGAAGTACACCCGAATCGAGAGGAGTACAATGCGCAGTTAAACGGACACGATGCGGACGGTAAATTCAAATGTACCCAATGTCCCTTCGGATGTAAACGAAAATCTGCACTATTGAAGCACCAAGAAATCCATTTGAAATCGTTCACATGTGACAATTGCGATAAGAATTTTGTCGATCAGCGTAATTTAACGAGACACATAGAAAGTAAACGTTGCAAGAAACCAATCATCAAATGCGAGGTTTGCGACAAAGAGTTCGATAAGACACATCTATACAAAAGTCACCTACGCAGACATACAACTGAGAAGCCATTTGAATGTAACATATGTGGAATGGCACTAAAATATAAGTCGGCTCTTGTTCAACATATACTCAGACATAGCGGTAATAAGTCGTTCAAATGTGAACATTGCGCCAAAACGTTTGACAACGCGAGCGCAAAGAAACGTCACCTGTCATGTCACAGTGGCGAGAAGCCGTTCCAATGCGAAATATGTAACAAGGGGTtcacatttaaacataacatgCATACACATATAAAACGACATagcaaaaagaaaaatgtacaATGCATGGTATGCGACAAAGTGTTCCCGAGAGAGAGCCGATTGATTTACCACATGCGTTCACATACGAATAGCAGGCCGTTCGGGTGCGATCTGTGTGTGAAAaagtttttcaataaacaaaatttaattaaacattataaagatAAACATCCGAATGCGagttatacaataacaatctCGGATGCAACTGTCGCTAAGTTAGTTTGGCAGAAAATTCAGAAGAAGTTGAAGGAGGGCGGAAAGTTTGAATAG
Protein Sequence: MSRKGVETNQFLIEPIINRRQVNLECQKSSEVHPNREEYNAQLNGHDADGKFKCTQCPFGCKRKSALLKHQEIHLKSFTCDNCDKNFVDQRNLTRHIESKRCKKPIIKCEVCDKEFDKTHLYKSHLRRHTTEKPFECNICGMALKYKSALVQHILRHSGNKSFKCEHCAKTFDNASAKKRHLSCHSGEKPFQCEICNKGFTFKHNMHTHIKRHSKKKNVQCMVCDKVFPRESRLIYHMRSHTNSRPFGCDLCVKKFFNKQNLIKHYKDKHPNASYTITISDATVAKLVWQKIQKKLKEGGKFE

Sequence clustering based on sequence similarity using MMseqs2