Labn003308.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010000558.1:7880-17074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.019 3.3 9.6 2.6 1 21 10 30 10 31 0.95 2 18 0.038 6.7 8.7 0.8 1 20 39 58 39 60 0.95 3 18 0.059 10 8.1 0.6 1 21 110 130 110 131 0.94 4 18 3.7 6.5e+02 2.4 3.4 1 13 139 151 139 153 0.88 5 18 0.015 2.7 9.9 0.8 1 21 203 223 203 224 0.96 6 18 8.9e-05 0.016 16.9 0.5 1 21 290 310 290 311 0.95 7 18 0.00068 0.12 14.2 2.9 1 21 360 380 360 381 0.96 8 18 1.8 3.1e+02 3.4 3.4 3 23 391 412 389 412 0.94 9 18 0.0011 0.19 13.6 0.3 1 21 448 468 448 469 0.93 10 18 0.059 10 8.0 4.6 1 21 522 542 522 543 0.96 11 18 0.082 14 7.6 0.2 1 21 609 629 609 630 0.93 12 18 0.00021 0.038 15.7 3.0 1 20 638 657 638 658 0.95 13 18 0.008 1.4 10.8 2.4 1 21 724 744 724 745 0.95 14 18 0.81 1.4e+02 4.5 9.9 1 23 753 775 753 776 0.94 15 18 0.0045 0.79 11.6 3.3 1 21 839 859 839 860 0.95 16 18 1.2 2.2e+02 3.9 3.6 1 23 868 891 868 891 0.96 17 18 0.00012 0.022 16.5 1.1 1 21 952 972 952 973 0.95 18 18 0.29 51 5.9 5.9 1 23 981 1004 981 1004 0.97
Sequence Information
- Coding Sequence
- atgattaaaaatcaaTCCAATTCAAGATATGTATGTCAAAAATGTGGCAGATcatatagttgtaaaaaaaatgttgtccGACATCTTAAGTACGAGTGTGGCGTCAATCCAAAATTCAAATGTGCTTATTGTCCAAAGCTTAGCAAAATAAGGGATAATTTGAAACAGCACTACACATattcAGAAGATCCACTTAACGATCCCTTATCTTTGATAAAGAAACCTACACTTAAGATAGTTCGACGACGAATTAAGCGTTTCAATGATACCTTATTTGCTCCGGATGAATTTACAACCAATATGATTGAAAATCCATCCAATCAGAGATATGTATGTCAAAACTGTAAAAGATCATATAGTTGGAAAAAGGGACTTGCTCAACATCTTAAATTCTATTGTGGTTTAAATCCAAAATTCAAATGTGCTTATTGTCCAAAGGTTTGCAAAATGAAAGatttTGAAAATCCATTCAACGATCCATTATTTTCACCAAAAAAACCTTCGATTAAAATACTTCAAAGCCAAATTAAGCATTCTAATGATGCTTTACCTTTGCCAAAGAAGTCTACAGCCAAAATAGACAAATTTCAAGGTAACAAGAGAAAATACATTTGCCAAAAGTGTAGCAGATCATATATTTGGAAAGGTCATCTTGTTCGACATCTTAGATACGAGTGTGGTGTAAATCCGAAATTTGCCTGCGCTTATTGTCCACAGTTTTGTAAACTTCTGAATTTTAATCATCAACTCAACGATCCTTTATTTTTGACACGTCAAATTGAGTATTTTAGTGGTACCTCATGTTTACTAAAAAAGCCTATGGCAAAAATAGTTACAAATCAAATGAAACGTCATGGTAAACACAATTACGTATGCAACAAATGTAATCGATCATACACTTTAAAAGGAAATCTTGTCCGACATGTTAAATACGAGTGTGGTGTTGATCCAAAATTTAGTTGCGCTTACTGTCCACATCTTTCTAAATATATTGATTTGGATGATCAACTCAACTATCTATTATCTTTACCAAAGAAGCCTAGATTCAGACGTAGCAAATTTCAATGCAATAAGGATTATACTTGCCAAAAGTGTGGCAGATCGTATACCTTGAGTAAAAATCTTGATCGACATCACAAGTTCGAGTGTGGTGTTAAACCAAAATTCGGTTGTGTTTCTTGTCCTTATATTACTAAACATGTATCTAGTTTAAAATCACACTACAAACATAGACATCCTGGACAGCCATTCATGTAttATTTTGGAGATTCACTCAACGATTCATTATCTTCGCCAAAGGAACCTACAATTAAAATAGTCAAATTTCAATGCAATGAGAAATACCTTTGCGAAAAGTGTGGCAGATCATATACTTACAAAAGGGGACTTGTTGAACATCTTAAATACGAATGTGGTGTTGATCCAAAATTCAGCTGCGCTTTATGTTCATATGTTTatcattaTTATCTACTCAATGATCCCTTATTTTCACCAACGAAGCTTCTAGACAGAAAAGTTAAAGCAAAGCAAGCAATGAAAGAAGAAACTAATTGTAGACAATTGTACAAGTGTCAAAAGTGTAGTAAAGTATACACTTGTAAAAGAAGTCTCGACCGACATCTTAGATACGAGTGTGGTGTTGATCCACAATTCAACTGCGCTTTATGTCCATATATTTattttaacaATCCATTCAGTGatcctttatttttatcagaagAATGTACAGTCCAACTGGTCGAACATCAAGTTAAGCTTACCAGTAATACTTCGTCTTTACCACATAATTCTGCAGCCGATGAGTTACAAGATAATGAGGGAAGATATATTTGCCAAAAGTGTGAAAAATCATATGTTTGGAAATGGACTCTTGCACAACATCTTAAGTACGAGTGTGGTGTCAATCCAAAATTCAGTTGTGCTTATTGTCATTACACTTCcaaaaggaaaagtaatttaaaaagacaTTATATTTGTGTACATCCTGGACAACcaattatatattattttagaGATCCACTTTATGATCCTTTATCTTCATCAAAGAAAACTAGACTCAAAACGATCAAACGTCAAATTATGAATCTCAAAGATACCTCATCTTTACCAAAGAAGTCTGCAGCCAAAATTGTTAAACGTCATCTAATAAAATCTCGTGGCTGCGATCGTCACGTTTGCCATAAATGTGGCAATGAATATACAAAAGATTATAATCTTAATCAACATCTTAAGTACGAGTGTGGTGTAAATCCAAAATTCAGATGTGCTTATTGTCCATATCTttgcaaaatgaaaagtaatttgaaaaaacacTGCAAACGTCACCATCCTGGACAGCAGTTCATGTATTattttAGAGATCCGCCTTATGATCCTTTATCTTCATCAAAGAAACCTAGACGCAAAACGATCAAACGTCAAATCAGGAATCACAAAAGTACCTCATCTTCAACAAAGAAGTCTGCAGTCAAAATTGTTAAACGTCATCTAATAAAACCCCGTGGCGATGGTCGCCACGTTTGCCATAAATGTGGCAAATCatacactttgaaaaataatcgtGATCGACATCTTAGATACGAGTGTGGTGTAAATCCGAAATTTGCCTGCGCTTATTGTGCACATCTTTGTAAACAAATTGGCAATTTAAGAGATCATTATAAACGTCGACATCCTGGAAAGCCATTCATGTATTattttaaaGATCCACTTTATGATCCTTTATCTTCACCAAAGAAACCTAGACTCAAAATGGTCAAAAGTCGTATCACAAATCTTAGCGATACCTCATCTTTGCCAAAAAAGTCTTCAGCCAATATTATATCTCGAGTAAAATATCAAACCTCTGATCGTCACGTTTGTCAAAAATGTGGCAGATCGTATAAATCGGAAAGGAATCTTGACCGACATCTTAAGCTTGAGTGTGGCGTGAGTCCAAAATTCAAATGCAATCATTGTCGATATGCTGCCAAACGTAGAAATGTTTTAAAGGCGCATCACTACACTAAACATCCTGGACAGCCATTCACGTATTGCAATCTCAACGAAGATTAA
- Protein Sequence
- MIKNQSNSRYVCQKCGRSYSCKKNVVRHLKYECGVNPKFKCAYCPKLSKIRDNLKQHYTYSEDPLNDPLSLIKKPTLKIVRRRIKRFNDTLFAPDEFTTNMIENPSNQRYVCQNCKRSYSWKKGLAQHLKFYCGLNPKFKCAYCPKVCKMKDFENPFNDPLFSPKKPSIKILQSQIKHSNDALPLPKKSTAKIDKFQGNKRKYICQKCSRSYIWKGHLVRHLRYECGVNPKFACAYCPQFCKLLNFNHQLNDPLFLTRQIEYFSGTSCLLKKPMAKIVTNQMKRHGKHNYVCNKCNRSYTLKGNLVRHVKYECGVDPKFSCAYCPHLSKYIDLDDQLNYLLSLPKKPRFRRSKFQCNKDYTCQKCGRSYTLSKNLDRHHKFECGVKPKFGCVSCPYITKHVSSLKSHYKHRHPGQPFMYYFGDSLNDSLSSPKEPTIKIVKFQCNEKYLCEKCGRSYTYKRGLVEHLKYECGVDPKFSCALCSYVYHYYLLNDPLFSPTKLLDRKVKAKQAMKEETNCRQLYKCQKCSKVYTCKRSLDRHLRYECGVDPQFNCALCPYIYFNNPFSDPLFLSEECTVQLVEHQVKLTSNTSSLPHNSAADELQDNEGRYICQKCEKSYVWKWTLAQHLKYECGVNPKFSCAYCHYTSKRKSNLKRHYICVHPGQPIIYYFRDPLYDPLSSSKKTRLKTIKRQIMNLKDTSSLPKKSAAKIVKRHLIKSRGCDRHVCHKCGNEYTKDYNLNQHLKYECGVNPKFRCAYCPYLCKMKSNLKKHCKRHHPGQQFMYYFRDPPYDPLSSSKKPRRKTIKRQIRNHKSTSSSTKKSAVKIVKRHLIKPRGDGRHVCHKCGKSYTLKNNRDRHLRYECGVNPKFACAYCAHLCKQIGNLRDHYKRRHPGKPFMYYFKDPLYDPLSSPKKPRLKMVKSRITNLSDTSSLPKKSSANIISRVKYQTSDRHVCQKCGRSYKSERNLDRHLKLECGVSPKFKCNHCRYAAKRRNVLKAHHYTKHPGQPFTYCNLNED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -