Labn005139.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001098.1:31057-37057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.011 1.9 10.4 0.4 3 23 1138 1158 1136 1158 0.94 2 7 0.063 11 8.0 1.6 1 23 1221 1243 1221 1243 0.98 3 7 0.00037 0.066 15.0 0.4 1 23 1344 1366 1344 1366 0.98 4 7 0.015 2.6 10.0 0.5 2 23 1380 1401 1379 1401 0.94 5 7 0.00054 0.095 14.5 0.2 1 20 1428 1447 1428 1450 0.93 6 7 0.0048 0.85 11.5 0.0 2 23 1493 1514 1492 1514 0.96 7 7 0.061 11 8.0 0.3 2 23 1520 1541 1519 1541 0.91
Sequence Information
- Coding Sequence
- ATGCCAAGAAAACGTAAATTAACAGACTTTGGTGAGCGGTGTAGATTGTGCCTAAATCGTGATAATTGCATGGTTGAACTTTTTGCCAATGGACTTGAGACACAAATTAATGATCTTGCCAAGTGTACGGATCAGGAGattacaaataaaacaaattatccaaaaaagaTATGTTATGGATGCCTTTACAAATTGGAAATGTGGAATGAATTTAAGTTTCAGTTTATAAAAACCAATAAGACCCTTATTAACCATTTCAAACTTTTTGAACCAtctCTTAATGATTCAATAGTGAGTATTGAATCGCAAACAGATGATTTACCAGATAATAATAAGAAAAGAgcaaaaattgatgaaaaattagaAACCTCAGCTGTTATTACTGTAAAATCAGACAGTTCTCCTACCAAAAAAGTGGCATTTGCTAATCAAATCAATTCATCTGACAGTCAAGATTTAgcagacaaaaaattaaatcgtcCTAAGAAAATGGGTCGTGAGGCTTCAACCAAACGCTGGGTTGAGCGCAAAAATGCGCTGATTGCCGCCACGGGTGAAACTTTGTCGGAAAGCGAATCCGACAACGGTACACAAATGTCACCTGTACAAAAAGCTCgtgaagaaataaaacaaaaaataaaagtcgatagagcattaaaaaaattacaaactaatTTAACAGATAAATTCAACGTTGTTAAGAAGTTGAATGTTCTGGAGGAAAGGAAAACGAGGTCTCGAATAGCAAACATTGGAGAATACAATTTGATGAATGCTGTAGTTCTCATACCACGATGCCCCATTCCAGCCCATTCAATTCATaagaaagaaagtatcattgaaaaagaaaaattaaacaataataaggaagtacaaaatataaatatgaaaggaaaagtgaaaaagaacgaaaaaataattgaagttagtaaaaaagaaattgagatagaaaaggaGAAGAAAAAACTAGATACATCTAAAGAAAATGTCGATATAAATATCAGTGAAAACGTGCATGAAGATAAAAATGACGATGTAAATGATGAGAataggaataataataaaatagatggTAGCCAACAtgatgaagaaataaaagaaattagaaaccaaattgaaggtaaaaatgatgaaaaaggtGACAATGATAGCAGAAACGATATTGAGATGGAGGAAGTTCAGAATGATGTAGAAAATGAAACTGTAAAAGTACATGAAAACGATAATGATATAAATGAAATTCACAGCAGAGATGAGCatgataatgaaaaagaaatagaaattgaaaaaaagaacgagaataatgaagaaaatgaaaacgaaaaaacGATCGATAGTGTAGTAGATAATTCGAGAGACATAATAGAAGAAAGTATATTACCTACTGACGAAGAAACAATCGTAAGTGGTAATGCAGGTGATTTAGAAATTATGGAATTACTTAGTAAAAAGCAAACAGAAAACATATCATCAGAAGACAAAAAGAACATTCCCTTTCCACCACAATTAGTTACATCAGAAGTAACCATAGGTAATGCAACTTACATTGTGACGACGACACTAGATATGCCAAATTCAGGACCAAATAATGATATTTCTTCAAAATCAAATGGTATAAATGTTGATGCTACTAGTCAATCTACGCAACTAGACAAGGTCCAATCAAAAGGTGCCAAACGGAAGAGTGGACCtGATGTTCAAAAATGCCTCAAAATTGAAGTTGAAGGCATGGAAGTAGAAGCTCTGCAACGAGTGCAATTAGATCTTGCACATTATATAAACGAGGACATCCATAGGCGTCTTATTGATGAATCTGACTTTATTGAAAGGCCTTCACCTAAGCCATCAAAATTCAAAGACTCATATGAAAACCTTAATTACCAGCTGCGTGGAATTATTGAAAAAGTTCTTAGAAATAATTACATGGCTGATAAACTTAATACATCAGCAACTTCAAATCATGATAAGATTTCACCTGAGTTTGTAAGAGCTGCAGAACAATCTCCGGTGTTTCAACCGATGGTGACAgttagtaaaattaaagaacTTGAAGTACCAAGTAAACCACGTCATCCTGTAAGTCGCACTGAAGGAAAACGTAAACTCGTGTTACCTAAGAAATATGAGGATTATTCGATCTACCTCCGCCCTGAAGATGATGAAGAAAGGCGAAAAATTTCGAGACCTAATTCAAGTGTTAAGCCATCACCGGCTTCAGCCAAACTAAACCAGTTGACTTTCGATTATAATTCATCCGACAAGCAGTCAAAGGAATCTTCTGACGTTGATACAGCTGATACTGTTATGGAAGACGATTCAAGTCAAGATACCTCTGTCGTTCCGGACTCAAACTTCGAGATTACACCAGCACCGATAGATACAGAAACAACCTCTACAACTGCCAGTGTCACTCCTACTCCTGCAGTTACAATTACCACCACAAGTAAATTAGaatcatttttatcatcaacGACTGCTACGCCTTATAAAATAATACCAACAAGCAAGGTAGCTGCAAACTTGGCGACTCCTACAAAGGTAGCTATTCCGATTAACAATACGCCAACTCCAGCTAACAAATCAATAACTCAGGCTAACAAGCCTGTAAGTTCCACGATCAAGCTAGGAGCAACTCCAACTAGTAAACCAATAACTTCAGCTGTCAAACCAGGATCAACTCCAGTTAGAAAGTTAGTAACTCCTATCACCAAAACCGGAGTAACTCCGACCATTACTAAACCAGGAGCCACAGGGGCAGCTAACAAACTGATAACTCCAGCAAACAAAACAGTAGCAACTCCGTCGACAGAGTTATCGAACAAGACTCCAGCAAGTCTGTTGACAACACCGTCAAACAAGACTCCAGCAAGCCCGTTGCCAACACCGGCAAGCAAAACTCCATCAACTCCGTTGACAACACCGACAAGCAAGACTGCAGCAACTCCGCTAACAACGCCTGCGAACAAGACTACAGCAACTTCGTTGACAACACCAGCAAACAAGACTGCTGCAACTCCGTTTACAACGCCAGCGAATAAGACTGCAGCAACGCCTTCGACAAAACCAGTGACAATCTCAACAAGTAAGTCTGCAGCAACCTCAGCGACTAAGTTGACACTTCAAGAAAATAAACCAACAACTAGCACAGTGAACAAAGTGGCATCTACACCGATTAAGCAAATAACTACTTTGATTAACAAATCTGCGGATGTTTCTGTGTCTTTGACATCTGCAGTCCCATCAACTACGTCGACAGTAATAACATCAAAGACTCCGGTAACAAATAAATCTACGACAAATTCAGAACAATCGTCATTATCGAATTCAACCAAACAGTTATCGTCTCTTAATCTCAAACGTACCAACGAAGATAGTTCAACGGTGACAACACCGAAACGTGAACGTCACCTATGTGGTATTTGCGGCAAAGAATTCTATTCAACGCAAGAAGCCAACATTCACATGGAGCAACATAGAGCACAGGCATCAAAAGCAGCATCAGCTGGTAGTGGTAACGCAACTACAGCAGCAACGACTAATTCTGTAAATGCCGCCAAGAACAACGCTGAGAAACCTAAACCGAAATTGATGAGGTGTAAGAGGTGTCAGGCTATTGTCGAAGCTAAGGAAGTTAAAACGCACATTTGCAATTCTACCAAATACAATTGCGATTTATGTGAATGCACTTTTGGCGCTGAACATTTGTTAACCGAGCATCTTGAAACGCATGCAAAACAAGCCAGGCATAAATCCGTTAAGACAGCGGCAGCGTCACCAATAACGTCGAATACCACAAGCATCGCGAAGACAACAAGAGTCAGTCCGGTTAAGGATAAATCTCGAGTTATCGCGAATAAAGTCGTCaaagaaaaagttgataatAAGGCAAGTATTtggtttaatattaaaactgtTTTGAGTATTaagataacaatattaattatgatATTCTTACAGAAGCCACTAAAAAAGCAAGAGCAGAAAAAAGATGATGCAGAAGACTCGCTGTCGGACAAGGATCCACAAAATTATTCATGTTTCGTTTGCAACAAGGTATTCGTTGATGAGCAGCAAATAAAAGATCATCTACAGATGCACTGCGATGAGGTGAGCGAGGACATTGAAAAGAACAACATCCAATGCGCGTTTTGCGGTGAGAAATTCCAGAACGAGGAGTCACTCGAGGAGCACGTAACTCACCATTTGAAGGAAGATGGTGATGAGAAAATCAACATGATGATAAATCTTGAGACGCGACGTGATCGAATACGCAGAACGATATTCCGTTGCGAACAGTGTAACGAGACGTTTAGCTCATCGATGCAACTTGCCATGCATTTGCCGGTTcataaggaagaagaagaagaagaagaggatgtTGATGATGAGACAACCGAAGCTGCTGTGGTCGTTGATTGCGAGCAGGAGGAAGCCCAAATTTCACAGCAGGTACCTGAAGATACAACCGAAGAACTTGTTTGCACCGTTTGCGACGAAATCTTTGACACAGAGGACGAACTTGACTACCATCTTAAGGCACACAACGGTAGTATCCACGTGTGTATACTATGTGAAAAACCATTCGCAAGTATTCGAGACTTGCAAAATCATGTGTCGTCACATTTGTAA
- Protein Sequence
- MPRKRKLTDFGERCRLCLNRDNCMVELFANGLETQINDLAKCTDQEITNKTNYPKKICYGCLYKLEMWNEFKFQFIKTNKTLINHFKLFEPSLNDSIVSIESQTDDLPDNNKKRAKIDEKLETSAVITVKSDSSPTKKVAFANQINSSDSQDLADKKLNRPKKMGREASTKRWVERKNALIAATGETLSESESDNGTQMSPVQKAREEIKQKIKVDRALKKLQTNLTDKFNVVKKLNVLEERKTRSRIANIGEYNLMNAVVLIPRCPIPAHSIHKKESIIEKEKLNNNKEVQNINMKGKVKKNEKIIEVSKKEIEIEKEKKKLDTSKENVDINISENVHEDKNDDVNDENRNNNKIDGSQHDEEIKEIRNQIEGKNDEKGDNDSRNDIEMEEVQNDVENETVKVHENDNDINEIHSRDEHDNEKEIEIEKKNENNEENENEKTIDSVVDNSRDIIEESILPTDEETIVSGNAGDLEIMELLSKKQTENISSEDKKNIPFPPQLVTSEVTIGNATYIVTTTLDMPNSGPNNDISSKSNGINVDATSQSTQLDKVQSKGAKRKSGPDVQKCLKIEVEGMEVEALQRVQLDLAHYINEDIHRRLIDESDFIERPSPKPSKFKDSYENLNYQLRGIIEKVLRNNYMADKLNTSATSNHDKISPEFVRAAEQSPVFQPMVTVSKIKELEVPSKPRHPVSRTEGKRKLVLPKKYEDYSIYLRPEDDEERRKISRPNSSVKPSPASAKLNQLTFDYNSSDKQSKESSDVDTADTVMEDDSSQDTSVVPDSNFEITPAPIDTETTSTTASVTPTPAVTITTTSKLESFLSSTTATPYKIIPTSKVAANLATPTKVAIPINNTPTPANKSITQANKPVSSTIKLGATPTSKPITSAVKPGSTPVRKLVTPITKTGVTPTITKPGATGAANKLITPANKTVATPSTELSNKTPASLLTTPSNKTPASPLPTPASKTPSTPLTTPTSKTAATPLTTPANKTTATSLTTPANKTAATPFTTPANKTAATPSTKPVTISTSKSAATSATKLTLQENKPTTSTVNKVASTPIKQITTLINKSADVSVSLTSAVPSTTSTVITSKTPVTNKSTTNSEQSSLSNSTKQLSSLNLKRTNEDSSTVTTPKRERHLCGICGKEFYSTQEANIHMEQHRAQASKAASAGSGNATTAATTNSVNAAKNNAEKPKPKLMRCKRCQAIVEAKEVKTHICNSTKYNCDLCECTFGAEHLLTEHLETHAKQARHKSVKTAAASPITSNTTSIAKTTRVSPVKDKSRVIANKVVKEKVDNKASIWFNIKTVLSIKITILIMIFLQKPLKKQEQKKDDAEDSLSDKDPQNYSCFVCNKVFVDEQQIKDHLQMHCDEVSEDIEKNNIQCAFCGEKFQNEESLEEHVTHHLKEDGDEKINMMINLETRRDRIRRTIFRCEQCNETFSSSMQLAMHLPVHKEEEEEEEDVDDETTEAAVVVDCEQEEAQISQQVPEDTTEELVCTVCDEIFDTEDELDYHLKAHNGSIHVCILCEKPFASIRDLQNHVSSHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -