Labn005669.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001311.1:1-20806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.022 3.9 9.4 0.1 1 21 191 211 191 212 0.94 2 10 0.00011 0.019 16.7 0.4 1 21 283 303 283 304 0.95 3 10 2.9e-05 0.0051 18.5 0.3 3 21 378 396 377 397 0.95 4 10 3.7e-05 0.0066 18.1 1.2 1 21 496 516 496 517 0.95 5 10 0.023 4.1 9.3 4.0 1 20 525 544 525 545 0.95 6 10 0.00051 0.091 14.5 0.4 1 20 642 661 642 663 0.93 7 10 0.021 3.6 9.5 2.0 1 20 671 690 671 690 0.95 8 10 2.6e-05 0.0046 18.6 0.8 2 21 746 765 745 766 0.95 9 10 0.031 5.5 8.9 0.2 1 21 925 945 925 946 0.91 10 10 0.007 1.2 11.0 0.2 1 21 1017 1037 1017 1038 0.93
Sequence Information
- Coding Sequence
- ATGTATTCTTATCCGGAAAATCTTGGTCGACATCTCAAGTATGAGTGTGaTTATAAAAGTCAATTCAACAATCCTACATCCTTGACAAAGGAATCTACAGCCGAATTAGTAAAACGTCGAATTAAGCGTTTCAGTAATACCTCATCTTTACCAAATAAGTCTACAATAAAATGTCCTTGTGAAACATCGTCATTACCAAAAAAATCCACGACAAAAGTAGTAAAACGTGgaattataaatcaaatgaaTAAGAATTCACTAGCACCTATGGTTTGTTTTTCAGATTTTGTAGATTCACTCTACGATCCATTATCTTCTCCAAAGAAACCTTCGATGAAAATACTTCGACGTCAAATTAAGCGTTCTAGTGCCACTTCATCTTTACCAAAGCAGTCTACAGCAAAAATAGCCAAATTTCAAgattttaaaaatctacttAATGATTCTTTATCTTTGTCAAAAGAATCTACTGTTAAAACAGTTCAACGTCGTAGTAAGCGTTCTAGTGCTACCTTGTCATTACCAAAGAAGTCTGTAGTCAAAAAGATCAAAGGTCAAAATAATAAGAGATACATTTGCGATAAGTGTAGCAGATCGTATACTTGGAAAGGTGATCTTGTTCGACATGTTAAAGACGAGTGTGGTGTTAATCCAAAATTTGCCTGCGCTTATTGTCCAAAGCTTTGCAAACGATTAAattatCAAGATTTACTCTTCGGTCCCTCATTTTTCTCAATGGAACCTACAGTTGAAATAGTTCAAAATCGAGTTAATCGTTCTAATGATTCCTTATCTCTGCCGATGGAGTCTACATCAAAAATAGTTAAATATCAATACAATGAGAATTACATTTGTCAGAAATGTGGCCGACTATATCGTTCGAAAGGGAATCTTGCTCGACATCTTAAGTACGAGTGTGGTGTGAATCCACAATTCAGTTGTGCTTATTGTTTAAAGCCTTACAAACTAAAAAattcTGAGGATTTATTCTACAATTTCTCACTTCCCTCAATGGAACCTACAGTTGAAATCATTCGACGTCCAATTCAGCATTCTAGTAATACCATATCTTTACCAGAGAATTTCACAGCCAAAATAGCCGAATTTCAAGGTAGTAATAAAAGAAACATTTGCCAAAAGTGTGGCCGATCATATTCTCGGAAAGGTGATCTTGCTCGACATCTTAAGTACGAGTGTGGTGTAAATCCACAATTCAGTTGTGCTTATTGTTTGAAGCCTTACAAACTAAAAAattcTAAAGATTTATACTACAATTTCTCACTTCCCTCAATGGAACCGACAGTTGAAATAATTCGACATCCGATTCAGCATTCTAGTAATACCATATCTTTACCAGAGAAGTTTACAGCCACAATAGCCGAATTTCAAGATTTTATAAGTCCATTCAACGATCCTTTATACATGTCAAAAAAATCTACACTCAAATTGGTCAAACGTCGAATTAAACGTCAAAATAATAAGCGTCACGTATGTCAAAACTGCGGCAGAACATATACCCAAAAATCCACACTTGGTCGACATCTAAGATACGAGTGTGGTTTAGATCCAAAATTTGCCTGCGCTTATTGTCCACAATTTTGTAAACGTATATCTCATTTAAAAAGACACTaTTTTGAAAATCCACTCAACGATCCTTTATCTCCaccaaacaaaattaaaatgcttCGACGTCCGATTAAGTATTCTAGTGATACCTTATCTCTGCCAATCCAGTCTACTGCCAAAATAGCCAAATTCCAAGatctTGAAAATCCACTCGATGATCCATTATTTTTGCCGAAAAAACCTTCGATGAAAATACTTCGACGTCGGATCAAGCGTTCTAGTGCCACTTCATCTTTAACAAAAAAGCATACAGTGAAACCAATTAAGCGTCGAATTAAGTGTCGAATCAGTATGAGCCATAATTGCCAAAAATGTGGCAAAGCATATGCTACGGAAAGAAATCTTGACCGACATCTTGAATACGAGTGTGGTGTAAATCCAAAATTTGCCTGTGCTTATTGTCCAAAGCTTTGCAAACGTacagataatttaaaaacacaCTATCCTCGTCTTTGTTTTTCAGATTTTGAAGATCCACTCAGTGATCCATTATATTTGCCAAGGGAACCTAGAATAGTTCGAAGTCGAATTAAGTCTTCTAATGATACCTTACTTTTTCCAAAAAAGTCTGCAGTCAAAAAAGTTCAATATCcttgtgataaaaaaaacgtGTGTCAAAACTGCGGCAGATCGTTTAATCAAAAGTACTTTTTAAACCGACATCTTAGAGACGAGTGTGGTGTTAATCCAAAATTCAGTTGTGCTTATTGTCAATACGCTGCCAAACgtaaaaAACCTATTTTTTGTCTTTCAGATTTTGTAGATTCATTTAACAATCCATTATCTTCGCCAAAGAAACCTTCGATTAAAATATTTCGACGTCGGTTCAAGTGGTCTAGTATCACTTTATCTTCATCAAAGATGTCTACAACCAAAATAGCCCAATTTCAAGGTTTCGTAGATTCACTCAACGATCCTTTATATTCACCAAAGGAAcctagaattaaaatatttcgacGTCGGTTCAAGCGTTCTAATGATGCTTTATCTTTACCAAAGAAGTCTTCAGCCAAAATAACCAAATTTCAAGATTTCTTAGATTCACTCAACGATCCATTATCTTCGCCAGAGAAATCTTCTAGTGATACATTATCTTTACCAAAAAAGTCAAGAGCTAAACATGGCAAATTTCAAGGCAATAAGAAACACATTTGCGAAAAGTGTGGCAAATCATATGCTTGGAAAAGGGGATTAGATCAACATCTTAGAATCGAGTGTGGTGTTAACCCCAAATTTATTTGCGCTTATTGTCCACAACTTTGTAAACATCTATaTTTCCGAGATCCCCTCAACGATCCATTAGCTTTGCCTGAGAAACCTTCAGTTAAAGTACTTTCACGTCGAATTATGCGGTCCAGTAACACTTCGTCTTCACCAGAGAAGTCTGCAACCAAAATACCTAAATTTCAAGATAATAAGAGACACATTTGCCAAAAGTGTGGCAGATCATATGTTTTGAAAGGGGCACTTGCTCTCCATCTTAAATACGAGTGTGGTGTTAATCCAAAATTTGCTTGCGTTTATTGTCCACATCTTTGTAAACTTAAAG
- Protein Sequence
- MYSYPENLGRHLKYECDYKSQFNNPTSLTKESTAELVKRRIKRFSNTSSLPNKSTIKCPCETSSLPKKSTTKVVKRGIINQMNKNSLAPMVCFSDFVDSLYDPLSSPKKPSMKILRRQIKRSSATSSLPKQSTAKIAKFQDFKNLLNDSLSLSKESTVKTVQRRSKRSSATLSLPKKSVVKKIKGQNNKRYICDKCSRSYTWKGDLVRHVKDECGVNPKFACAYCPKLCKRLNYQDLLFGPSFFSMEPTVEIVQNRVNRSNDSLSLPMESTSKIVKYQYNENYICQKCGRLYRSKGNLARHLKYECGVNPQFSCAYCLKPYKLKNSEDLFYNFSLPSMEPTVEIIRRPIQHSSNTISLPENFTAKIAEFQGSNKRNICQKCGRSYSRKGDLARHLKYECGVNPQFSCAYCLKPYKLKNSKDLYYNFSLPSMEPTVEIIRHPIQHSSNTISLPEKFTATIAEFQDFISPFNDPLYMSKKSTLKLVKRRIKRQNNKRHVCQNCGRTYTQKSTLGRHLRYECGLDPKFACAYCPQFCKRISHLKRHYFENPLNDPLSPPNKIKMLRRPIKYSSDTLSLPIQSTAKIAKFQDLENPLDDPLFLPKKPSMKILRRRIKRSSATSSLTKKHTVKPIKRRIKCRISMSHNCQKCGKAYATERNLDRHLEYECGVNPKFACAYCPKLCKRTDNLKTHYPRLCFSDFEDPLSDPLYLPREPRIVRSRIKSSNDTLLFPKKSAVKKVQYPCDKKNVCQNCGRSFNQKYFLNRHLRDECGVNPKFSCAYCQYAAKRKKPIFCLSDFVDSFNNPLSSPKKPSIKIFRRRFKWSSITLSSSKMSTTKIAQFQGFVDSLNDPLYSPKEPRIKIFRRRFKRSNDALSLPKKSSAKITKFQDFLDSLNDPLSSPEKSSSDTLSLPKKSRAKHGKFQGNKKHICEKCGKSYAWKRGLDQHLRIECGVNPKFICAYCPQLCKHLYFRDPLNDPLALPEKPSVKVLSRRIMRSSNTSSSPEKSATKIPKFQDNKRHICQKCGRSYVLKGALALHLKYECGVNPKFACVYCPHLCKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -