Labn005671.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001311.1:24627-32700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0002 0.035 15.8 0.2 1 21 37 57 37 58 0.96 2 11 0.066 12 7.9 0.7 1 23 66 89 66 89 0.95 3 11 0.069 12 7.8 1.5 2 21 116 135 116 136 0.91 4 11 6e-06 0.0011 20.6 1.5 2 21 170 189 170 190 0.95 5 11 0.14 25 6.9 10.0 1 23 198 221 198 221 0.96 6 11 0.0003 0.054 15.3 0.8 1 21 322 342 322 343 0.95 7 11 0.17 29 6.6 7.0 1 20 351 370 351 372 0.94 8 11 6.4e-05 0.011 17.4 1.2 1 21 409 429 409 430 0.95 9 11 0.096 17 7.4 5.3 3 21 440 458 438 463 0.93 10 11 0.0023 0.41 12.5 1.5 3 21 494 512 492 513 0.92 11 11 0.0011 0.19 13.5 4.5 1 23 521 544 521 544 0.96
Sequence Information
- Coding Sequence
- TTCTTCTTCGTAAACGTAGAAAATCCAGCAGAAGTCGGTAGAAGAAAGCATAATTATCCAGCTAATCGTCGTCGTAGACGTCCATCAGCTCACGGTTACAACAAACGTTACAGTTGTCCAAATTGTCCATCTGCTTATAATCGTCGTGACAATTTACTACAACATTTACGTTACGCTTGTAATAAAAATCCCCAATTTTGCTGTCCTTACTGTGATCTCGTTGCTAAAATAAGTGGAAACATTTTTACTCACGTACGACTTAAACATCCGTTTAATGATGTTGTTCCAGAAAGTGATCCTCTGGCACTGGTTGGCGATGTCATACAAAATAATGATGGAAAAAACGTTTGCGGAACCTGTGGTCGAGCTTACAAATACCTTCATCATTTGACATTTCATCAGAAGCATAATTGCAATAAAACTTTTCCGTGTCATCCAGTACTAACGCAGTCATTCGAGTTCGTCGCTATGCCTGTCACACTACCCATTAATCAAAGCTCAAGAAATACCTGCGAACGATGTGGCAAATCCTACAGACACAACACTAATCTAACTCGACACATCAAACTCGAATGTGGTAAACCACCACGTTTCTGCTGCTCCTATTGTAATCAACGAACtaaacataaaaatgatatgaaaaatCATATATTACGATGTCATAAGGGTTATGAGaacAATTCAGATCCGTTCGACGACGACCACAACCAAAATCATATCGTTCCTACtgttcaatttgtaaaaaatacgtTACTAAAATCGCCAGACATCGAAAAATACATGATAAAGGTGCTTATCCAACATGTAACAAATGTTACAAACAAGTTTCCTGGGGAAGATTTACTGAGCacgttaaaaaatgtaaaattatcagCTGTACCAATTGTAAAAGACTatcaATATTCATTCCACGAGCAGTCATTAATGATCAATATACCCGAACAGTCTAACACAATCAAGCCTTACATATGTACCCGATGCGGTCGTTCTTACAAATACGATGCAACTTTACGTCGTCATCTAAAATACGAATGTGGTAAACTAGCAAGATTCTGTTGTGTCTATTGTTCTCATCGTTGTTATTACAAATCTAATCTTCAGCAGCATATTGAATTCGCTTTTGTTGGCTGTGGCGAGGAGAGTGAATCAACCGATGAACGTCGTGTCAGCAGACTAAGGATCGTCAAATCTGAATCGCTGCTTGATGTTAAATGGTTACCTAATCACGTATGCACTCAATGTGGACGTTCATATAAACGTGATGCTACTCTAAGACGACATCTTAAGTACGAGTGTAATAAGCCTAAACGATTTGGATGCGTTAATTGTAATTATAGATGCAAGCGCAAGGATAATTTAAGATATCACGTGAATAATTGTTTGAAACATCAACCATCTTACTATGATTCGAAGTCGTATCTTTATggaacaacagcaacaacaacaactgacCCATCTGGAAAATCTAAGGTCCATTTATGCGCACAATGTGGCAAGACTTATGCCCACGTCTTCACCCTCAGACGACATCTTAAATACGAATGTGGAAAACCGGCGAGATTCTGTTGCAGCTACTGTCCTCATCGAAGCAAGTACAAGGCTAATCTTCAGCAGCACATTATGATACAACATCGGGGACAACCACTCGCTATGCATGTTGATCCTGAGTGA
- Protein Sequence
- FFFVNVENPAEVGRRKHNYPANRRRRRPSAHGYNKRYSCPNCPSAYNRRDNLLQHLRYACNKNPQFCCPYCDLVAKISGNIFTHVRLKHPFNDVVPESDPLALVGDVIQNNDGKNVCGTCGRAYKYLHHLTFHQKHNCNKTFPCHPVLTQSFEFVAMPVTLPINQSSRNTCERCGKSYRHNTNLTRHIKLECGKPPRFCCSYCNQRTKHKNDMKNHILRCHKGYENNSDPFDDDHNQNHIVPTVQFVKNTLLKSPDIEKYMIKVLIQHVTNVTNKFPGEDLLSTLKNVKLSAVPIVKDYQYSFHEQSLMINIPEQSNTIKPYICTRCGRSYKYDATLRRHLKYECGKLARFCCVYCSHRCYYKSNLQQHIEFAFVGCGEESESTDERRVSRLRIVKSESLLDVKWLPNHVCTQCGRSYKRDATLRRHLKYECNKPKRFGCVNCNYRCKRKDNLRYHVNNCLKHQPSYYDSKSYLYGTTATTTTDPSGKSKVHLCAQCGKTYAHVFTLRRHLKYECGKPARFCCSYCPHRSKYKANLQQHIMIQHRGQPLAMHVDPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -