Basic Information

Insect: Leptomastidea abnormis
Gene Symbol: -
Assembly: GCA_030522805.1
Location: JAPYZE010001276.1:13512-14654[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.013 2.4 10.1 0.1 2 23 55 77 55 77 0.96

2 8 0.029 5.2 9.0 0.3 1 23 97 120 97 120 0.96

3 8 0.0026 0.45 12.3 0.5 1 23 139 161 139 161 0.95

4 8 0.00013 0.023 16.4 3.7 1 23 172 194 172 194 0.99

5 8 2.1e-06 0.00038 22.0 1.2 1 23 204 226 204 226 0.98

6 8 7.4e-06 0.0013 20.3 5.7 1 23 232 254 232 254 0.98

7 8 1.5e-05 0.0026 19.4 1.9 1 23 260 282 260 282 0.98

8 8 2.1e-06 0.00036 22.1 0.9 1 23 288 310 288 310 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.013	2.4	10.1	0.1	2	23	55	77	55	77	0.96
2	8	0.029	5.2	9.0	0.3	1	23	97	120	97	120	0.96
3	8	0.0026	0.45	12.3	0.5	1	23	139	161	139	161	0.95
4	8	0.00013	0.023	16.4	3.7	1	23	172	194	172	194	0.99
5	8	2.1e-06	0.00038	22.0	1.2	1	23	204	226	204	226	0.98
6	8	7.4e-06	0.0013	20.3	5.7	1	23	232	254	232	254	0.98
7	8	1.5e-05	0.0026	19.4	1.9	1	23	260	282	260	282	0.98
8	8	2.1e-06	0.00036	22.1	0.9	1	23	288	310	288	310	0.98

Sequence Information

Coding Sequence: atgcatcagcagcagcaacatcagatCCCAGTGATAACAGCAAGTGCGCTTCTCGACACACCAACTGTGGTAGGAACAGCAAGGGTTTCCGGTCACTCGGTAATGAAAACCGAGAATACCGACGGCAAAGGCTTGGTGGTGATGCCACCCGTCGACGTGCCCCAGTGCGCCTTCTGCACCGAGACATTCGTCGACGAGCCGAGCCTTGACTATCACCTGAAGAGCGAGCACGGCACCGACGATCAGCTGCCTCAGCAGCACCACGAGGAAATCGTCACCGACGAAATGTACGCCTGTGAGCGCTGTCCCTCGGTCTACCCTGACGAGATCAGCTTCATGCATCACCAGAAGCTCGAGCACTCCTCCTCGgtccatcagcagcagcagcagcagctgcactCCGAAGCATCGCCCTTCCTATGCGTGATCTGCAACGCGACGTTCCGTTACATGCAGGGCCTGCGCCTGCACCGCAAGATCCACGAGCCGGATTACAAGCCACCGGAGAAGAAGTACGAGTGCGAGGTCTGCCGCAAGCGCTTCTGCCGCAGGCAGGTCCTCCTAGTGCACAAGCGCACCCACGTTGGGATCGCGGTGCCTCAACACGAGTTCGTCTGTCCCACCTGCAACACCACCGTCTCCTCGCGCACCTACCTCAAGGTCCACATGCGCAAGCACACCGGCTACAAACCGCACAAGTGCGACATGTGCGAGAAGTGCTTCTCCTCAACCAGCTATCTTAACGTTCACAGGCGAGTCCATACTGGGGAGAGGCCGCACAAGTGCGGCTATTGCGGCAAGGGCTTCACCCAGCGCACCACCATGGTCGTGCACGAGCGCTCCCACACCGGCGAAAGGCCTTATCCTTGCGACATCTGTTCCCGGAACTTTGCCTCCAAAACCATGCTCAAGTCCCATCTAAAGACTCACGAGAAGCGCAAGGTACGTAGCGAGGAAGAGCAGCGAACTTTGCAGCTGCATCTCCAGCATCACCAGTCCCAGCAGCAAAATCAGCAGATTATTATGTCACCGCCCTCTTCGATCGAAGAACAAATATCGAATATCGATAAAATGACGTTAAGTGGAATTGATATGCatgtacaacaacaacaacatgaaCAAGTCATGCTTATCAACCCGTAG
Protein Sequence: MHQQQQHQIPVITASALLDTPTVVGTARVSGHSVMKTENTDGKGLVVMPPVDVPQCAFCTETFVDEPSLDYHLKSEHGTDDQLPQQHHEEIVTDEMYACERCPSVYPDEISFMHHQKLEHSSSVHQQQQQQLHSEASPFLCVICNATFRYMQGLRLHRKIHEPDYKPPEKKYECEVCRKRFCRRQVLLVHKRTHVGIAVPQHEFVCPTCNTTVSSRTYLKVHMRKHTGYKPHKCDMCEKCFSSTSYLNVHRRVHTGERPHKCGYCGKGFTQRTTMVVHERSHTGERPYPCDICSRNFASKTMLKSHLKTHEKRKVRSEEEQRTLQLHLQHHQSQQQNQQIIMSPPSSIEEQISNIDKMTLSGIDMHVQQQQHEQVMLINP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -