Labn005720.2
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001337.1:31172-33338[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.7 1.2e+02 4.7 0.0 1 22 316 337 316 339 0.89 2 10 0.96 1.7e+02 4.2 3.2 1 23 346 368 346 368 0.93 3 10 0.0072 1.3 10.9 3.3 1 20 374 393 374 396 0.95 4 10 1.4e-05 0.0024 19.5 2.4 1 23 402 425 402 425 0.96 5 10 0.00021 0.037 15.8 6.1 1 23 432 454 432 454 0.98 6 10 7e-05 0.012 17.3 0.3 1 23 465 487 465 487 0.98 7 10 5.9e-07 0.0001 23.8 0.3 1 23 493 515 493 515 0.98 8 10 4.6e-07 8.1e-05 24.1 3.0 1 23 521 543 521 543 0.98 9 10 1.3e-05 0.0023 19.6 0.2 1 20 549 568 549 571 0.94 10 10 4.7e-05 0.0084 17.8 0.7 1 23 577 599 577 599 0.98
Sequence Information
- Coding Sequence
- ATGATGGATGGTTGGGAAATAAGCTGGGCGGATATGTGCCGCACTTGTATGGAGGGAGACGACGATCTTCAGCCTCTTTACAATGATGACGAAAATGAAATTGGAGAGGAGGAGATTGCCTACAAACTTATGCAAGTGTCATCGGTGAAGattacgaAGGATGACGGCCTACCATCGAAAATTTGTGATAAATGCGCCTACAGAACAAGTGCATTCTATGATTTTAAATTGTTGATCCAGGAGTCTGATATGAAACTTAAGCAAATTTATTACGAACATCTCAATCCTGattacaaagataaTTTGAAAGAAGAGGAAATAAACATACCGCAAGAGTTTCAGATGCCACAAGACTGTATTTCTGTGAAAGAAGAACCCAATTATTCTCTTGATAATAGTGATAAAATTAGTACTAGTATTTTAGAAGCTGTTAATGAAAATGGTGTTGAGACAACTGTTGTAGaggattttgaaaatatttgtaatactgtaactttaaatttaatagatgAAAATCTCATTGGTCCACCTATTAATGATGGTAATGCGGAACATATGAGACTTGTTTTTCATTCAGATGAAATGAATGTAATTGAAGGAATTAATCAGTGCCAAATggaagaaaatcaaaataatcaagcaattcaagaaataaatatcTCATGTCTAGATATAgctaattcaaaaaatataaatgataattccaaaaattttttaaaagccaaTAACAAATCTATTGAAGAACAAGTTATAGGAATAACTCAATCGATACTGTCTCAACCAAGTAGCTGTAAtgataataaagataatattgaTACCGTTATTGTTCTTGATGATGATAGTGATTCAGATAATTATGTAGATACTAGAGAAAATATTGTCGGCAGTATTAATGATACCATAACAAAAATTAAGGAAATCAAACAAGGAGGTAAAATTGTACAATATCAGTGTACACTTTGCTTGCAAAACTATCCAGAGCTTTCTGAAGTTTTAGCCCATATAGTTGATTTACATGTGCCAATTGCTGGTCCATATTACTGCATTGTTTGTGAAATGGATTGTGATagtattaaacatttaaaaactcaTGTCAAAACGCACAAGGGTCCAAACCCATACATAtgttttctttgtaaaaaagcTTATGTGATGAAGAGATATTTAAAACGTCATATGGCATGTCATACTGATTTTCCCAGACATCGTTGTACAAAATGTGGAAAAAGGTTCAAAGTAAAAACTGAACTAGAAGATCACATTACTATATATCATGGAGAAGAGGCAACATCTTTTAAATGTAGTCAGTGTACTAGAGTATTTCATCATAAGGGAAATTATAAACgtcatttaataattcatttagaTCCAAAAGGTCTTAAATTACCAAAGTATCCTTGTGATATTTGcggtaaaagatttttaaataatcgtgCAATGATCATTCATAGAAGAACTCATACGGGAGAAAAACCATTTGTATGTGAAATTTGTAACAGAGCATTTACTCAACAAGGAAATTtaataagtcataaaaaaatacacatcaaTCCAGGTAGTTTTAAATGCAATGATTGTGGAAAATGCTTTAATCAAAAAGCTACTCTAAAAGATCATACTCTAATACACTCAGGAGAAAAGCCTTTCGTATGCACTGTCTGTGGATATGCATTTACTTTCAGTGCTGCTTTAAGGCGTCATATGTGGTCTCACAGCGAAGGAAAACCATATGAATGCGATTTTTGTAAAGCAAGATTTGTTGGGAGATATGATCTTAGGCGTCATATGACAATACATACTGGAAGGCCAAAGCACAAAAGATATagagttaataaattaaaaaaaaataatgatgttaTTAACGAAGAAGTTGAGAATATTACTGAAGATCCATTGAATACTGATACAATTTTTgtagaacaaatttttttatgtaatgagCCTATTCAAATCGTTTCACAAGGAGATTCAGGAAAAGAGAATGTTGATTCATTACTTAAATACATTCAGTATGAaacgaattga
- Protein Sequence
- MMDGWEISWADMCRTCMEGDDDLQPLYNDDENEIGEEEIAYKLMQVSSVKITKDDGLPSKICDKCAYRTSAFYDFKLLIQESDMKLKQIYYEHLNPDYKDNLKEEEINIPQEFQMPQDCISVKEEPNYSLDNSDKISTSILEAVNENGVETTVVEDFENICNTVTLNLIDENLIGPPINDGNAEHMRLVFHSDEMNVIEGINQCQMEENQNNQAIQEINISCLDIANSKNINDNSKNFLKANNKSIEEQVIGITQSILSQPSSCNDNKDNIDTVIVLDDDSDSDNYVDTRENIVGSINDTITKIKEIKQGGKIVQYQCTLCLQNYPELSEVLAHIVDLHVPIAGPYYCIVCEMDCDSIKHLKTHVKTHKGPNPYICFLCKKAYVMKRYLKRHMACHTDFPRHRCTKCGKRFKVKTELEDHITIYHGEEATSFKCSQCTRVFHHKGNYKRHLIIHLDPKGLKLPKYPCDICGKRFLNNRAMIIHRRTHTGEKPFVCEICNRAFTQQGNLISHKKIHINPGSFKCNDCGKCFNQKATLKDHTLIHSGEKPFVCTVCGYAFTFSAALRRHMWSHSEGKPYECDFCKARFVGRYDLRRHMTIHTGRPKHKRYRVNKLKKNNDVINEEVENITEDPLNTDTIFVEQIFLCNEPIQIVSQGDSGKENVDSLLKYIQYETN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -