Labn012791.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010005904.1:4629-9547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5 8.9e+02 2.0 9.2 2 23 253 275 252 275 0.96 2 20 0.12 22 7.0 5.0 1 23 330 352 330 352 0.98 3 20 0.00017 0.03 16.1 0.5 1 23 401 423 401 423 0.98 4 20 0.053 9.4 8.2 0.2 1 20 478 497 478 499 0.93 5 20 0.058 10 8.1 0.9 2 23 540 561 539 561 0.97 6 20 0.00069 0.12 14.1 0.9 1 23 603 625 603 625 0.97 7 20 0.00034 0.059 15.1 0.1 1 23 631 653 631 653 0.98 8 20 0.00079 0.14 14.0 1.9 1 23 697 720 697 720 0.95 9 20 1.4 2.5e+02 3.7 0.3 2 13 729 740 728 741 0.87 10 20 0.00014 0.025 16.3 1.0 2 19 786 803 785 808 0.89 11 20 0.00042 0.074 14.8 1.2 1 23 846 868 846 868 0.93 12 20 0.076 13 7.7 0.1 2 20 926 944 925 944 0.95 13 20 0.0031 0.54 12.1 0.1 2 23 963 984 962 984 0.97 14 20 0.00023 0.041 15.6 2.9 1 23 1026 1048 1026 1048 0.98 15 20 0.089 16 7.5 4.0 3 21 1070 1088 1069 1092 0.89 16 20 0.11 19 7.3 0.2 2 23 1164 1186 1163 1186 0.93 17 20 0.0019 0.34 12.7 2.9 2 23 1225 1247 1224 1247 0.93 18 20 0.00091 0.16 13.8 0.4 1 23 1254 1278 1254 1278 0.95 19 20 0.0085 1.5 10.7 1.7 1 23 1283 1306 1283 1306 0.97 20 20 0.0068 1.2 11.0 0.4 3 23 1338 1359 1336 1359 0.95
Sequence Information
- Coding Sequence
- ATGGAGGACGTGATCGAGGTCGCTGGGCTGGAGAGTGCGTGCAGGCTCTGCCTCACGACGGACCAAAGTCGCTCTTCGATTTTCGGCGTACCCGACGCCAGCGTGCCTTTTGCTGAGAAGATACGCGCCTGCTTGTCGATACAGgTCAAGTCAGACGACAAGCTCTCAACTTTAGTGTGCACttcttgtataaaaaatataaatcattggCACTCCTACAAAGACACGTGTCTCAAAGCACAAGAAAAACTCCATAACTGGCtaacaaaaaagaattcattattaCCTGTAATAACTATAAAAGAAGAACCAGAAGATATAGAGTATCGAGATGGTATTGAACAAGCTGTACAAAATGAATTTACAATTAGTAATCATGTTGATAGAAATGAAAATGGAACAAATATCAATCAAAGTAATGTCATATCTGCAACTTATAGTCCAGCACAAGCATTTCCAGAGCAATCTTCAGAAATTGAAGATGGAATGGAAGCTGATCTTTTTTCTCCAGAAGTACAAATTAAAACTGAACCCATGGATACAGAAGATGAAGATGATTGTAATATAGATGTGGAGTCAATTAACAGCGGTGAATTACTAATTAATCCAATGGCTGTTGCAGTATCCAACTCAAATAGTGAAAGGGTAATGGAAGCTGATTCAacccaaaaatttaaaactcaaaGGTTTGcatctagaaaaaaaagaggtcgaGGACCTCATACACATTTTAGAGGTcttcgtatttttaaaaaaaagtgcacccattgtaaaattaatttacattctAAACATTCTTACACGCAACACATGTCCAGGTATCATGCTGATAAAcagaaatcaaaattaattcaacATGTGGATAACACTGAATCAGTTGCTGATATTCAAAATGAAAGTAATCTTGAAGATGCAGAATTtgaaaagatgataaaaacTGATCCCTTGACTCCTGTTCAGAAGACAATTATTGGTCAATTAAAAACATTCTCCTGCTACTCATGCAAACAAACCTTTTTCGATCGCCGACATACATTgaatcatatacgtatacatatgccAGATTTGCGACCATATACTTGCATTGCTTGCCTCACTGAATTTTCCGATCGATCCATGTACAAGCTACATTGTGGTGCATCTTTTGAATGCGCAATGAAGATTGCTCTGGTAGTTCCTAAAATCGGGCACGAGAAGTACTTTACGTGCAACATGTGTCTCAAAGCTTTCAACAATCGACAGGAACTGCTAACCCATCTAGCCATGCACTCTGATAAGCAACAGAAGCAGATGTCGCAGCCTATTAGGCCAGCTACTGCAGCAAATCTTTCAAACGCGATGAGCTTACCCACTGTTTCGAGGCCCGACTCTTCACCGTCTAAGAGAACTCCACCTTCCGGACCGTACATGAATGGTGATCCCGCGCACAATCATATGTGCGATTTGTGCGGTATGATTTATAGATACAGGCCAAACATGGTCAAGCATCGCGAGCTGTGCATGACGCTACCCGACAACATTAGGACTTCATACCGCTGCGTGCAATGCAGCATGACTTACCTTGTATACAAAAAGTTCTACACTCACGTTTTCTACGAGCACAAGAAGCGCGAAATCACCTGCTTCACTTGCTATGCCAAGTTTCCTACTGCTGATGATTATTTGAATCATCACGAGACGCACCGCGTCATTTCGAATCAAGAGCAGCCTGGTCAGCAGTTGCAACAGCAGGAACAACCAGATGGCAGTTATCTTAACGATCCATTAAATTCGTCGAGCCATCCGACCGACGCAAGCAAGGAATCCTTCAATTGCGCCCTTTGCAACGAAACCTTTGCAACGCAGCACGCGCTTAGCGAACATCGAAATCTACATCTCAAAGTAAAGATTTACTCGTGCGTTATCTGCCGCAGTATGTTCAGCAGCTCGGGTGCACTCGAGGTCCACATGAAGGAACATGGTATCGATGACGCATCCGAGCAAGCGGGTAATAGCTCTGTTATTGAGTACAGCCGCAATATCAATACCAATACCAATTCGCTTAACGATTCCTCATTGTCAGCAATCTCCGACCCTGGCAAAGTAGCTTTCCGCTGCCGCCCGTGCAATAGGAATTTCTCAAACTACGCAAATCTTAAGCGGCACGAGCGAAATTTGCATGTAAATCAGCAAAGACGCCGCTGGAGTTGTGCTTATTGTAAGCGTCGATTTAAATCCGCTGAAATTCACGATGAACATGTACGATTGATGCATCATGGAGCTCAGCCAGGCCAGCAGCAAGGACAATCACATGCCAGCCTGAATATGGCTTCTCTGACAACTCCGCTCTCTTCTCCGACTGGCAAGCCGTTGATGCAGTGTCCCAAGTGCCCCAAGACGTTTGCCTACCAAGGCAATCTAATACAACACTGCCAAAACGTTCACAAAGAAAATCATTTTGAACGCGTCGTTCGCCAGGCACCGCCTGCTCCAAGATCAGTCGCTCCCACAGTAGCAGCTCCAGTCGCATCTCCTTCACGTCCCCGCATCGGTGGTCATACGTGCGACATATGCGGCAAGACTTTCCGAGAAGGTCAATCCCTTAAGACTCATAGGGGTTGGCATTTGCGTACGAATTATCGTCTCAAAGTTGACCAAAATGCGAGCTTAGACGAGAGAACGTTAAGTGGCTCGGGATATCAGACGCCGATGATGAGTCCGCCCAAACCGGCGAAAGCTCGAAAGTCTTTTCCTAACAATCCACCTCAGAAGCAGCTGAATAACATCGGCAGTTTGCAATGCCAAGTTTGCGACGATCGCTTTAGCGACGTGGGCGAGCTCAGAAATCATTTGTGGGATGTGCATTGTGCGCGCAATAAGCCCGAAAAGTCATTTACGACCAGCCTGCAGTGCGAGCTTTGCACCAACAAGTTTCCCGACGAACAAGCCCTGCAAGACCACATGAAGTGGCACTCCGAGAATCCCATtttcagcagcaacagccgccCTAGTAGCAATAGTATCGACGGTTTCGGaaatagcagtaacagcagtgcTGTAGCTCCTACCACCAATGTCATCCTGAATAAAAAGACGTTTCAGTGTGACGTGTGCGGCAAGTACTATAGCAATCGTAAGATGTTCTTGCGCCACAAGAAACTGCATAAAATAGTGCCCGCCTCGACGATGCTGAACCTCCAGTCGTTGCAGACTTCTAGGCGCCGCTTCTGCCACGCCTGCCAGAAGAGCTTTGCAACGGATGCGTCGCTCAAGCGTCACAAGGCATCGTCTTGCCACATAAACATGGTGCGCTCGCAGATGCAGGCAGCAGCCAAGAAGATCACGACCACGGCGATGGTACATCAGCCGCCGCCGCCGGCGCCGCTGCCAGTCGGTCAGACCGATGCGACGTCCGATGTCAAGGACGAGCCTAGCATAGATTATGTCAGGGCCGCTACTCCGGCGGTCCCGTCTTCGCAAATCCAGCATGCAATGAAAAAGAAACCGGTTACGTGCTCCGTTTGCAAAACCATCTTCCCCAACATGAGCGTGCTGTACCAGCACAAACAGCTTGTTCACAAGATGCCTCCCGGAAGTGGTGCTGTTCCCGCTGTGGCCAACAGGCCCTACGGCACCAGCAGTCAGCAGCCGCAGAAGGAGTTTGTCCCACAGATTGGCTCCGAAAGTCTGCTCTCCTGCAATGTGTGCCACAAGCAGTTCTCCGGCCTCGCCAACCTCAAGCTTCATATCTCGCACAAGCATAAGACTAAGCCCACTTCCTTTCCTTGTACCTCGCCAGGCTGCAAACTTATCTTCAGTAGCAACAGCTCGCTTAAGAACCACGAGACTTCGCACACCAACATGATTTACAACTGTCTGCTCTGCGACAAGCACGTGTTTTCTAAAGTTGCTATGACCAAGCACATGCTGACGATGCACAAGGCAATGTACCAATCGGGCGCGAGCAGGAGTACCTTATGGACCGAGACGGATTTGACAAACTACAGTGTAAAAAATTCACAGAGCACGGCTTGCCCCAAGTGCAAAATTAAGTATCCAAATCTGAAGGCTTTGAAAATACACTATCTCAAGTTCCATGACAAAACATAA
- Protein Sequence
- MEDVIEVAGLESACRLCLTTDQSRSSIFGVPDASVPFAEKIRACLSIQVKSDDKLSTLVCTSCIKNINHWHSYKDTCLKAQEKLHNWLTKKNSLLPVITIKEEPEDIEYRDGIEQAVQNEFTISNHVDRNENGTNINQSNVISATYSPAQAFPEQSSEIEDGMEADLFSPEVQIKTEPMDTEDEDDCNIDVESINSGELLINPMAVAVSNSNSERVMEADSTQKFKTQRFASRKKRGRGPHTHFRGLRIFKKKCTHCKINLHSKHSYTQHMSRYHADKQKSKLIQHVDNTESVADIQNESNLEDAEFEKMIKTDPLTPVQKTIIGQLKTFSCYSCKQTFFDRRHTLNHIRIHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPKIGHEKYFTCNMCLKAFNNRQELLTHLAMHSDKQQKQMSQPIRPATAANLSNAMSLPTVSRPDSSPSKRTPPSGPYMNGDPAHNHMCDLCGMIYRYRPNMVKHRELCMTLPDNIRTSYRCVQCSMTYLVYKKFYTHVFYEHKKREITCFTCYAKFPTADDYLNHHETHRVISNQEQPGQQLQQQEQPDGSYLNDPLNSSSHPTDASKESFNCALCNETFATQHALSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKEHGIDDASEQAGNSSVIEYSRNINTNTNSLNDSSLSAISDPGKVAFRCRPCNRNFSNYANLKRHERNLHVNQQRRRWSCAYCKRRFKSAEIHDEHVRLMHHGAQPGQQQGQSHASLNMASLTTPLSSPTGKPLMQCPKCPKTFAYQGNLIQHCQNVHKENHFERVVRQAPPAPRSVAPTVAAPVASPSRPRIGGHTCDICGKTFREGQSLKTHRGWHLRTNYRLKVDQNASLDERTLSGSGYQTPMMSPPKPAKARKSFPNNPPQKQLNNIGSLQCQVCDDRFSDVGELRNHLWDVHCARNKPEKSFTTSLQCELCTNKFPDEQALQDHMKWHSENPIFSSNSRPSSNSIDGFGNSSNSSAVAPTTNVILNKKTFQCDVCGKYYSNRKMFLRHKKLHKIVPASTMLNLQSLQTSRRRFCHACQKSFATDASLKRHKASSCHINMVRSQMQAAAKKITTTAMVHQPPPPAPLPVGQTDATSDVKDEPSIDYVRAATPAVPSSQIQHAMKKKPVTCSVCKTIFPNMSVLYQHKQLVHKMPPGSGAVPAVANRPYGTSSQQPQKEFVPQIGSESLLSCNVCHKQFSGLANLKLHISHKHKTKPTSFPCTSPGCKLIFSSNSSLKNHETSHTNMIYNCLLCDKHVFSKVAMTKHMLTMHKAMYQSGASRSTLWTETDLTNYSVKNSQSTACPKCKIKYPNLKALKIHYLKFHDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -