Basic Information

Insect: Leptomastidea abnormis
Gene Symbol: -
Assembly: GCA_030522805.1
Location: JAPYZE010001276.1:24620-26287[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0033 0.58 12.0 1.2 1 23 222 245 222 245 0.98

2 11 1.3 2.3e+02 3.8 1.6 6 23 262 278 258 278 0.90

3 11 0.00018 0.033 15.9 0.6 3 23 286 306 284 306 0.96

4 11 0.0062 1.1 11.1 0.2 1 23 312 334 312 334 0.97

5 11 2e-05 0.0035 19.0 3.9 1 23 344 366 344 366 0.97

6 11 0.0005 0.088 14.6 0.1 1 23 372 395 372 395 0.97

7 11 0.00022 0.039 15.7 0.6 2 23 410 431 409 431 0.97

8 11 6.1e-06 0.0011 20.6 1.3 1 23 437 459 437 459 0.95

9 11 1.2e-07 2.2e-05 25.9 0.5 1 23 465 487 465 487 0.98

10 11 9.7e-07 0.00017 23.1 3.1 1 23 493 515 493 515 0.99

11 11 0.012 2.1 10.2 4.9 1 23 521 543 521 543 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0033	0.58	12.0	1.2	1	23	222	245	222	245	0.98
2	11	1.3	2.3e+02	3.8	1.6	6	23	262	278	258	278	0.90
3	11	0.00018	0.033	15.9	0.6	3	23	286	306	284	306	0.96
4	11	0.0062	1.1	11.1	0.2	1	23	312	334	312	334	0.97
5	11	2e-05	0.0035	19.0	3.9	1	23	344	366	344	366	0.97
6	11	0.0005	0.088	14.6	0.1	1	23	372	395	372	395	0.97
7	11	0.00022	0.039	15.7	0.6	2	23	410	431	409	431	0.97
8	11	6.1e-06	0.0011	20.6	1.3	1	23	437	459	437	459	0.95
9	11	1.2e-07	2.2e-05	25.9	0.5	1	23	465	487	465	487	0.98
10	11	9.7e-07	0.00017	23.1	3.1	1	23	493	515	493	515	0.99
11	11	0.012	2.1	10.2	4.9	1	23	521	543	521	543	0.99

Sequence Information

Coding Sequence: ATGGTCTGCATCAAAATGGAAACACGAGATTTAACTTCAAGTCCCGAATCAACGCAATCTAACgctaaaaagaagaagaagaagaggactaAATCAATACACACGCAAACAGAAGATGTAGAtatcacaaagaaaaagaagaaatcaacACAGTCAATAGCTACGGTTAGCccaaaaaagaaatcaacagCAATAACTTCGGTTATCCCAAAAAAGAGattaacatcagcagcagcaacagcagcttcaATAGCTTCAGTTAGCccaaaaaagaaatcaacacAGTCAGTAGCTGCTTCAGTTAGccctaaaaagaaattattacaattaatagcCGCTTCAGTTAGctcaaaaaagaaatcaacacCAAAAATAGTATCTacagaaattataaaagaaaaatcaacgcCAGCAGTAGTAgcttctacttctacttcttcttcttcttcttcggttaGCCCCAAAAAGAAATCGACAACGGAGCCAGTAGTAGCTTCAGTTACCGTAaataagaagaaggaaaagaagaaagaggcaAAAAGTCGTGTGCCAAGAGCCGAAAGTGAAAGTAGCGAGTCAGAAGTATCAACGCTGGACGAAGATTTGCCACTTGCCTTCTACGAGAATTGTAAATTCCGCTTGGACcgcgaggaaaaaaaaacttacgagTGCGATCACTGCGGTGTGTCGTGGACCTCGTATCGGGGTATGCGCCAGCATCTACGTACGCAGCATTCGAATCCCGATGAAGTtgaaccaacaaaaaaaatccattGTGCGCCGTGCAACAAAGATTTTTCCGAGAGAAATTACCGGAGACACGCGATTCGGCACGAGCAGATTCCGGATTTAGCTTGCCGTTACTGTCCTCGCAAGTTCGTTCTCCAGCGTGACCTCAGACGCCACGAGAAGATTCACTTCGGTAAAAAGGTCTACAACTGCACCGCGTGCGATTACGAGACGACCTACCGCAAGTCCTTGGTCGCCCATCAGGCTGTGCACACGGGCAACTTTGACGAGCTGCGCCCGCACAAGTGCACCGAGTGCAACAAGCGTTTCCGCAAGCCGAACGAACTCCAGCAGCACTTCAACATACACGCCGGTCTTCGGCCTTTCGTCTGCACCGGCTGCCCCAGCGCCTTCCCCCTGCGCACTCAGCTCAACATCCACATTAAAAAACTCCACCCCGAGCTCAGGGTGGTCGAGGTCGAGAAGAACACCAGCACCACCTGCGACATATGCGGCCGAGTCATGGCCTCGCTGAAGACCTTGCGCCGACACAGGATGACCCACGATCCGGTCAAGCATTTCCTCTGCGACTTGTGCGGCAAGAGCCTCAGCACTGCCGAGCATCTCAAGTCCCACCGCAGAATACACACCGGCGAGAAACCTTTTGTTTGCGACCAGTGCGGCAAGAGGTTCATCGACTCCGAGAACCTTAGGTTGCATCGCCGTGTACATACTGGCGAGAGACCTTACAAGTGCGAGACCTGCTTGAAGACTTTCAGTCAGAGATCATCATTTACTGTACACTTGCGGACCCATACTGGTGAACGGCCTTATTCCTGTCAAATTTGTTTGAAGGGATTCTCATGCCATGGAAGTCTCAATTCTCATCAGAAGACACACTACCCACGAAATCTCATCAATGAAAACTTTGGTTTTTAG
Protein Sequence: MVCIKMETRDLTSSPESTQSNAKKKKKKRTKSIHTQTEDVDITKKKKKSTQSIATVSPKKKSTAITSVIPKKRLTSAAATAASIASVSPKKKSTQSVAASVSPKKKLLQLIAASVSSKKKSTPKIVSTEIIKEKSTPAVVASTSTSSSSSSVSPKKKSTTEPVVASVTVNKKKEKKKEAKSRVPRAESESSESEVSTLDEDLPLAFYENCKFRLDREEKKTYECDHCGVSWTSYRGMRQHLRTQHSNPDEVEPTKKIHCAPCNKDFSERNYRRHAIRHEQIPDLACRYCPRKFVLQRDLRRHEKIHFGKKVYNCTACDYETTYRKSLVAHQAVHTGNFDELRPHKCTECNKRFRKPNELQQHFNIHAGLRPFVCTGCPSAFPLRTQLNIHIKKLHPELRVVEVEKNTSTTCDICGRVMASLKTLRRHRMTHDPVKHFLCDLCGKSLSTAEHLKSHRRIHTGEKPFVCDQCGKRFIDSENLRLHRRVHTGERPYKCETCLKTFSQRSSFTVHLRTHTGERPYSCQICLKGFSCHGSLNSHQKTHYPRNLINENFGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -