Labn019761.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- Zbtb3
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010013751.1:3601-7516[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00046 0.081 14.7 0.7 2 23 37 58 36 58 0.96 2 17 1.3e-05 0.0023 19.5 3.8 1 23 64 87 64 87 0.96 3 17 0.012 2.1 10.2 1.2 1 23 94 117 94 117 0.95 4 17 2.8 5e+02 2.8 0.1 2 19 122 139 121 139 0.85 5 17 0.0012 0.21 13.4 4.6 1 23 151 174 151 174 0.97 6 17 0.0038 0.68 11.8 1.4 1 21 181 201 181 202 0.97 7 17 0.00088 0.16 13.8 3.5 3 20 209 226 207 229 0.94 8 17 6 1.1e+03 1.7 0.2 2 11 237 246 236 250 0.81 9 17 0.053 9.4 8.2 0.3 1 23 547 570 547 570 0.97 10 17 0.0024 0.42 12.4 4.2 1 23 576 599 576 599 0.97 11 17 0.38 66 5.5 1.3 1 23 608 631 608 631 0.93 12 17 5e-06 0.00089 20.9 1.2 1 23 637 660 637 660 0.95 13 17 0.00031 0.055 15.2 0.2 3 23 668 688 666 688 0.97 14 17 0.00013 0.022 16.4 0.2 2 23 695 717 694 717 0.96 15 17 4.3e-07 7.6e-05 24.2 2.1 1 23 721 743 721 743 0.99 16 17 0.36 64 5.6 0.1 1 9 749 757 749 771 0.81 17 17 2.8e-05 0.0049 18.5 1.0 1 23 777 800 777 800 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTAACCGAAGTGAAGAAAAGTGGAGaaataaaaaccataaaaactttGGCGCCTAAAATAGAAgcagctagcagcagcagcagcagtggggAAGACCAATTGACCTGCGAGGTATGCAACGTAAAATTCACAAGTCGCGAGCTTTATCGTACCCACTTGTTGTCTCACTGCGATCAAAAGCCATTCGAGTGTCGCTTCTGCTACCGCACCTTCAGTCGGAATATCCATCTGAAGCGGCACATGCGCGCCGCCCACAACAGCGCGGAGTTGAAGCACGCCTGCGACAGTTGTCCTTACGAGTGCACGAGCCTAGGCGATCTACGCGAGCATATACTAAAAAATCACTTGGCTACCTTGTCCTGCTCGAAGTGCCTGCTGCGATTCACCGATCAGGCGGCAAAAGCTGCTCACGACCAGGCGGGATGCCAAGGCTCCGGTCGCAACTACGTTTGCGAGATATGCGATCAGTGCTTTTCTACACGACTGAGACTCAAGATACACTTGCACAAGCGTCACAGTATCGCTCAGGATATTTATCAGTGCCAGCATTGCTTGCAGTATTTGTCCAGCTTGGCTAATCTTCAAAAACATCAGCGCAATCAGTGCTCGCTTTTCGGGTGCGAGCTTTGCGATAGAAAATTTAAACGAAGGGATTACCTGACCAAGCATCTGCTTTGTCATACCAAAGCTAAGACTGTTAAACGCTGTGAGAATTGCGACGAGGAATTTCATAATGATGGATTGCCAGCTAAGAAGTCAAGCACGAGCATTCAAGAATCAATCATCAAGTTGAAATCCATCGAACagctattaaaaacaaaaagctcGAATAAAGCTCAGTCGccgcagaagcagcagcagcaacaacaacagtctTTGAAGATTCTATCAAGTTTGGATGAGCCGCTATTGTTATACCAGTCGGAGAAGGAGCCAATACAGCCGCATTACGTACTTATACAACAGCCCGATCAGAAATACGTCCTCCAGCAAATACCACCGCGTCCAAATCCCTTTTTCGTACTGCCAACCTCGCGACAGAAGAAGAATCCACTGATGCTCGTTAAAAAAGTCATTAGTAAGACTAAGAAAACGCAAGATGAGCAGGAAGTTGTAGATTTGAGCGAGACGAATATTATTAGTAAGCCTTCTACTAAGCCTACCGAGAAAAAGTTGCCTCCAAAAAGAAAGCGCAAGCCTAAACAAGCCTATTCACCGGATAAGAAGCAAAAGACAGGCGATGAAGAGGAAAAGGTAACGAAACCAAGGAAGAAATTGTTGAAACCCCGACTACCGCGTAAGAAGCCGCTCCAATCAAAGTTGGATTCGTCGAAGGCTGAAATTGATGCGGAAGTAGATCAGCAGCTGGAACCGAGTGTAAAAGAGTCCAAGCAGGTAATCGAAGAAACGGAAAAAGCCAAAAATACCAGCAACACCAACAGTAGTAGTgtaacgaagaaaaagaaaaaagagaaaaaggaggtcaacgtaaaagaggaagaaatggagctgcagcagcaggaggGCGTAGAGAATAAAGACGCTAAcacagacgacgacgacgatgatggtTTGAGCGACTTGTGCGAAAAAATGAAAGTCGTTTACGAGCGAATAGAAGGCGGCGGTGGCTACGTTTGCAACATGTGCGACGTAACGCGTAAAAAGCGCAAGGACATAATATACCACGTTAGAATTGTCCACAGCTTAATCAAGCCCTTCAAATGCGACTTGTGCGAGCACGCGTACAAGACGGAAAAGAGCTTGCAGCATCACAAGCGTTTGGCGCATCGACCGGAGGAAAAACAGGTGGAGTATCTGTGCGACAAGTGTCCCTACCGTTCGATCTACAAGAACTCCATGCAATCGCACGTTTATCGTAAGCACTCGAAAGAGTATAAATTTGAATGTGACGATTGTGGTAAGCAATTCAAGACCAAGGCCCAGGTCAGAGTTCACATGGCGCACACGCACTACGTGCCCGAGATGGTGATATGCGACGTATGCGGCAAGCTTTATCGCGGCCAGGCTCTTCTCAACTCTCACAGGCGCAAGCACATATTTAAAAACGAGGTAGTCTGCACTATATGCAATCGCAAGCTCGTTAACGAGGCGAGTCTCGAGCGCCACATGCAGCGACTACACAATTCAACTTACGAGTGCTCGGATTGCGgggctaaatttaaaaatcagtaTTACCTCACGAAGCATCGCAACACACATACTCGGGAACAGGCTTACGAGTGTCCGGAGTGCGGCAAGATCATGGCTAATAAGACGATACAGAGGATACACTCGCTCTCGCATCTCGGTTTGAAGCCATATAGGTGTAATGTTTGCGGTGTAGGATTTACCCAGCGCACACCTCTGATGCATCATTGGAGGACCCAGCATCCTGATGCTCAGGATCCACCTCCGCCTGTTGTCGTCAGGGATATTTATAAGATGATGGACGAGCGTAGAGCAAAGTTGAGAGCCGAGGAGAGAGCAAGGAATAATCGTGCTAAGGAGATTTTGGATGCtgatgttactgctgctgttgcggaTAGTAATGCGAATCGTAATGACATTGATAAAGATGATGGTGATAATGAAAATGATGAgaataaaaatgagaataagGATGAAGATGAGTATCAGGATATTAATATGCATGTGAATATGGATCTGAATAaggacgacgatgatgatgagggtaataatataattttggagTTGGATGAGGAGTTGGCTGATATAATAGTGGATCAATGA
- Protein Sequence
- MEVTEVKKSGEIKTIKTLAPKIEAASSSSSSGEDQLTCEVCNVKFTSRELYRTHLLSHCDQKPFECRFCYRTFSRNIHLKRHMRAAHNSAELKHACDSCPYECTSLGDLREHILKNHLATLSCSKCLLRFTDQAAKAAHDQAGCQGSGRNYVCEICDQCFSTRLRLKIHLHKRHSIAQDIYQCQHCLQYLSSLANLQKHQRNQCSLFGCELCDRKFKRRDYLTKHLLCHTKAKTVKRCENCDEEFHNDGLPAKKSSTSIQESIIKLKSIEQLLKTKSSNKAQSPQKQQQQQQQSLKILSSLDEPLLLYQSEKEPIQPHYVLIQQPDQKYVLQQIPPRPNPFFVLPTSRQKKNPLMLVKKVISKTKKTQDEQEVVDLSETNIISKPSTKPTEKKLPPKRKRKPKQAYSPDKKQKTGDEEEKVTKPRKKLLKPRLPRKKPLQSKLDSSKAEIDAEVDQQLEPSVKESKQVIEETEKAKNTSNTNSSSVTKKKKKEKKEVNVKEEEMELQQQEGVENKDANTDDDDDDGLSDLCEKMKVVYERIEGGGGYVCNMCDVTRKKRKDIIYHVRIVHSLIKPFKCDLCEHAYKTEKSLQHHKRLAHRPEEKQVEYLCDKCPYRSIYKNSMQSHVYRKHSKEYKFECDDCGKQFKTKAQVRVHMAHTHYVPEMVICDVCGKLYRGQALLNSHRRKHIFKNEVVCTICNRKLVNEASLERHMQRLHNSTYECSDCGAKFKNQYYLTKHRNTHTREQAYECPECGKIMANKTIQRIHSLSHLGLKPYRCNVCGVGFTQRTPLMHHWRTQHPDAQDPPPPVVVRDIYKMMDERRAKLRAEERARNNRAKEILDADVTAAVADSNANRNDIDKDDGDNENDENKNENKDEDEYQDINMHVNMDLNKDDDDDEGNNIILELDEELADIIVDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -