Labn003665.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptomastidea abnormis
Gene Symbol
-
Assembly
GCA_030522805.1
Location
JAPYZE010000645.1:10234-14875[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0082 1.5 10.7 1.9 1 23 300 322 300 322 0.96
2 13 7.9e-05 0.014 17.1 0.7 1 23 327 351 327 351 0.92
3 13 0.00035 0.062 15.1 3.5 1 23 413 436 413 436 0.97
4 13 8.5e-05 0.015 17.0 0.1 1 23 442 465 442 465 0.95
5 13 0.00053 0.093 14.5 0.5 1 23 472 495 472 495 0.96
6 13 6.7e-07 0.00012 23.6 2.6 1 23 500 522 500 522 0.98
7 13 6.6e-06 0.0012 20.5 1.0 1 23 528 550 528 550 0.98
8 13 0.0044 0.79 11.6 8.6 1 23 556 578 556 578 0.97
9 13 1.3e-08 2.3e-06 29.0 0.7 1 23 584 606 584 606 0.99
10 13 4.3e-05 0.0077 17.9 7.6 1 23 612 634 612 634 0.98
11 13 3.3 5.8e+02 2.6 6.0 2 23 641 662 640 662 0.95
12 13 3.2e-05 0.0056 18.4 3.7 1 23 668 690 668 690 0.98
13 13 3.7e-07 6.5e-05 24.4 1.9 1 23 696 718 696 718 0.98

Sequence Information

Coding Sequence
ATGGCGGAGGTCCAGCTCTACGACTCGATGATCTGTCGATTATGCGCGGAAAACAATGAAAGCGGTGAAATGTTATTTACCGATGATGCCGAGGAGACGGAGTGGAGTTCGATGGTCAATCGTTATTTGCCGCtcaagATTTATGACGATGGCAAACTTCCCCGTACCATTTGTCCTGGATGTAAAATTCAATTGGAAGGAACCGTACAATTTTTTGAACTGCTCATCAATGGACagcgtaaaattaaagaaatgtgGAAACAGCAGGTTGAAATCCAATATAAAACTGAAAAAGAACATCTTAAGCAAAAAAGTATTCATGCAGCATTAAAAAATTCTGGATTgaacaatgaaaatttatctataGATACAGATGATCcagaaataaactttaacaTAACTACTGATGGCTTTGCATATGATACTAAACACGAACTAAGTACACAAATGAAAATACTGGATAAGCCTAGAATAGAAGAAATTAAATCTCCAAAATGTTTTATAGAAgaagaatttaaagaaatagaaaaagatgTATTTAATGAAGGAACCTGTcaggaagaagaagacaagCAAGATGAGGAAGAATTAGAtggagataaaaaaagaagaagaaaaagaaaaattccaaagagGTACATGGAGACACTGCAAGGGAAAGAGTtggacaaaatttttaaaaaagatggtGTCTTagatgaaaattcaattcacGTAAAATATGAGCCTTTTGACAATGAAAATGCTTTAAATTTGGATAATTGTAATAGTGATTCAGAAATCATTGGTCATTTAGAAACTGAAGAGGGAAAAAATTTAGGTGAATTAGTTGTTATCAATAAAAATCGGAATCgatcaaatcaaaaacaaaaatccaaAGTTAGAAGAAAAAGCAAATTTACGTGCTCTTTTTGTGAAAAAGGATTCATGCAACGCAGTAAATATATCATTCATAAAAGTCTTCATAAAGTCATCAAATATGAATGTACAGAATGTCAAATTCACTTTTCTAATGAAGATGATTTAAAATTGCATCAAACAACAATAATCCATATTGGAGAAAATGTTACCAAATTAaatgaagatataaaaaaacttgaaagcaCTAGTCAAATTCAAGAAAATGGTGCCTCAAATGCTATAGAAAATCACGAATTAAATGATGCTGTGGACAAAGCTCAagagaaaatagaaataaaagaaccTGAACAAGAATTTGAAGAGATGGAAAACACATTTAAATGTCAAAAATGTAATAAGCATTTtcagtcaaaaaataatttaggaaGTCATGTTAAAGTTGTACATCAAGGAGAGAAACCTTTTATATGTGAACTATGCAGTAAAGCTTTTGCATATCAGTCAAGTTTGCAAGGTCATATAGAAATAGTTCATCAGAAAACAGATAAAGGTTTTCCTTGTGATGTATGTGGAAAAGTTCTTAATCACCCTAGTTCAATGATGTACCATAAATCAACGGAACATAATGGACGTCGCTTTGTATGTAATAAatgtggaaaaatttttaaacataaacaGCTTTTACAACGTCATCAAATCGTTCATTCTGAAGACAGACCTTATCCATGTGATAATTGTAATTCTTCTTTTAAAACGAAagctaatttattaaatcatcaaTCAACTCACACAGGAGAAAAGAAACATTGCTGTGAGCTCTGTAATACAAAGTTTGCTCATAAAACTAGTTTAACTTTACATTACAGGACACACACAGGTCAAAAACCTTACAAATGTGATGTGTGCTCAAAAAGTTTTTCACAAAACGGTAATTTACAAGAACACATGCGTATTCATACCGGAGAAAAACCTTACTGTTGTGATCATTGTGGACGAAAGTTTACAACATCTTCACAATTTAAACTACACGTGAAACGACACACTGGTGAACGTCCATGGAAGTGTGACACTTgttcaaaatcatttttacatAAAGACACGTGGAAATGTCATGTTCGTAGACACACAGGGGAACGTCCTTTTCAATGCTCAACTTGTTCCCGTTGTTTTACGGAGCAGTGGGCGCTAAAGAAACATTTGCGTTTACATACAGgaGAAAAACCTTATAGCTGTGAAATGTGTGGAAAAGCATTTGCAGATTGCTCAAATTTAACtaaacataaaaaaGTGCACAAAAATCAACTATTACGAGAAGCTACTGAATTGCCAAGAAATAGGAATTCAAGTGATATTGGCAGTGAAGAATTATGGCAAATTTTACCCAATGCTCAAGAAAATCGAAATATGCTTAGTAAAACGAATGAAGTAATTAATTCAAGTGATATTTCTGACACGTCTAGAATAATTTATGTTGCTTACGAAAATCCAAATCAAATCAATGAACAAGCAGCATTGCAAATCGGCAAGGAAGCCATGATAAATGGTGATATACCAAATATTCATGAAGAAGAATCTAATGATTCAATGGATATGGACTTTTCTGATTTGCAACTTACTattacaGATGTAGATGGTAATCCTATTTCATTGTCAATGCAACAAGCACGACAATTATTGTCTGATGGGCAACTGTTTAATCAAATAAACAGTGGGCAAATACAAGTTCAAAATTCTTTATGTGAGAAAGAATCAAATTTAGACATTTCTTCTCAAAGTGCTAAAGAAATTTCCAAAACATCTGTAGCATCAACTCTCCAAACAGATGCTGAAgctatagtaaaaattttacaagATGAAAATACTGATGCTACAACTGTAGCAGCAATGAGTCAAATAAATGCAGAGGAACAGCTTGATATAACagacaatcaaaattttattgaattaattggACCAGAAGGAGAAAAAATACGATTAATAAATGTAGATCAACTACAGTTATCCTCAGGGTACCTGACTATTGTTTAA
Protein Sequence
MAEVQLYDSMICRLCAENNESGEMLFTDDAEETEWSSMVNRYLPLKIYDDGKLPRTICPGCKIQLEGTVQFFELLINGQRKIKEMWKQQVEIQYKTEKEHLKQKSIHAALKNSGLNNENLSIDTDDPEINFNITTDGFAYDTKHELSTQMKILDKPRIEEIKSPKCFIEEEFKEIEKDVFNEGTCQEEEDKQDEEELDGDKKRRRKRKIPKRYMETLQGKELDKIFKKDGVLDENSIHVKYEPFDNENALNLDNCNSDSEIIGHLETEEGKNLGELVVINKNRNRSNQKQKSKVRRKSKFTCSFCEKGFMQRSKYIIHKSLHKVIKYECTECQIHFSNEDDLKLHQTTIIHIGENVTKLNEDIKKLESTSQIQENGASNAIENHELNDAVDKAQEKIEIKEPEQEFEEMENTFKCQKCNKHFQSKNNLGSHVKVVHQGEKPFICELCSKAFAYQSSLQGHIEIVHQKTDKGFPCDVCGKVLNHPSSMMYHKSTEHNGRRFVCNKCGKIFKHKQLLQRHQIVHSEDRPYPCDNCNSSFKTKANLLNHQSTHTGEKKHCCELCNTKFAHKTSLTLHYRTHTGQKPYKCDVCSKSFSQNGNLQEHMRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWKCDTCSKSFLHKDTWKCHVRRHTGERPFQCSTCSRCFTEQWALKKHLRLHTGEKPYSCEMCGKAFADCSNLTKHKKVHKNQLLREATELPRNRNSSDIGSEELWQILPNAQENRNMLSKTNEVINSSDISDTSRIIYVAYENPNQINEQAALQIGKEAMINGDIPNIHEEESNDSMDMDFSDLQLTITDVDGNPISLSMQQARQLLSDGQLFNQINSGQIQVQNSLCEKESNLDISSQSAKEISKTSVASTLQTDAEAIVKILQDENTDATTVAAMSQINAEEQLDITDNQNFIELIGPEGEKIRLINVDQLQLSSGYLTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-