Basic Information

Insect: Leptomastidea abnormis
Gene Symbol: SCRT1
Assembly: GCA_030522805.1
Location: JAPYZE010000971.1:1951-4983[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.43 12.4 0.6 1 23 272 294 272 294 0.95

2 12 3e-05 0.0052 18.4 1.2 1 23 302 324 302 324 0.98

3 12 9.2e-06 0.0016 20.0 0.5 2 23 332 353 331 353 0.97

4 12 0.00035 0.063 15.0 1.2 1 23 359 381 359 381 0.98

5 12 8.9e-05 0.016 16.9 2.5 1 23 388 410 388 410 0.98

6 12 1.2e-05 0.0022 19.6 0.4 1 23 416 438 416 438 0.96

7 12 4.8e-06 0.00085 20.9 0.3 1 23 444 466 444 466 0.98

8 12 6.9e-07 0.00012 23.6 1.2 1 23 472 495 472 495 0.96

9 12 5.3e-06 0.00094 20.8 0.5 1 23 501 524 501 524 0.96

10 12 5.8e-06 0.001 20.7 2.9 1 23 530 552 530 552 0.99

11 12 8.9e-05 0.016 16.9 0.4 1 23 558 580 558 580 0.94

12 12 0.00077 0.14 14.0 0.1 1 23 586 610 586 610 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.43	12.4	0.6	1	23	272	294	272	294	0.95
2	12	3e-05	0.0052	18.4	1.2	1	23	302	324	302	324	0.98
3	12	9.2e-06	0.0016	20.0	0.5	2	23	332	353	331	353	0.97
4	12	0.00035	0.063	15.0	1.2	1	23	359	381	359	381	0.98
5	12	8.9e-05	0.016	16.9	2.5	1	23	388	410	388	410	0.98
6	12	1.2e-05	0.0022	19.6	0.4	1	23	416	438	416	438	0.96
7	12	4.8e-06	0.00085	20.9	0.3	1	23	444	466	444	466	0.98
8	12	6.9e-07	0.00012	23.6	1.2	1	23	472	495	472	495	0.96
9	12	5.3e-06	0.00094	20.8	0.5	1	23	501	524	501	524	0.96
10	12	5.8e-06	0.001	20.7	2.9	1	23	530	552	530	552	0.99
11	12	8.9e-05	0.016	16.9	0.4	1	23	558	580	558	580	0.94
12	12	0.00077	0.14	14.0	0.1	1	23	586	610	586	610	0.94

Sequence Information

Coding Sequence: ATGTCTATGGATTTAGAAAAAGACTCGCAAAATTGCTTGCTCTGCAACAACAAAGCAGGAATCTCATCTAGACAAAGCATCAGTATTTTTGGAGAAAATGCCATTACTAGTTCAGAAAAGACAATTCTCAGTGTACTGTGTTCTACTTTGCAAACGCCGTTAATCAAAGAAAAGATTCATTCTTCCATTATGTGTAAAAAGTGCTGTAAACTTGTAAAtgaaGCTGATGAACTAGAAATCAAATTGAACAAGGTCAAAgaagaaatttgtaatttatttaaaaaaacatcagaaAAGTTTTGTGATTCTGATAAAAAAGATGATGTTATTGACCATGATTATGTTGATAATATAGACATTACAAATTCAGTATCTGTTGtcaaattagaaaaacttttagATACaaagaagaaacgaaaaaaagttACTATTGTGGAACCACCAGAGAaaacaaatactAAAAATGCTAGTGCAGCTAAAATTGTTGAAAGTAACAAAGAAGCTAAAGTCATTAATGAAAAGGAAAATAAGGCAGATTTGGAAAATTCAATGAGTGATAACGATTTTCCTGATAATAGCAATGATTATTCTGATGTAGAGGATCCAGACACAGATTTACCTAATAATGATTCAACATCTGAAGTTCCTGTTGATACAAAAAGttcaaagaaacaaaaagataaaacaGATACTCCCAAGgagttgGCTATTAAACAAGATGATAGTTATACATGTGTTAAATGTAATGATGGAGTGAAACGAGATGCAAAGACAATAATATCTCATTTAAAAATGGAACACGAGGCTCGATTGTATATTTGTGATGTTTGTGGTGATATGTTTTCAAAAAGAACTGATCTATCCCATCATTTAGACGACCACGTTGCAACAGAAGAGGGTGATTTTCAATGTGAAGTATGCAACAGAATATTTAGTAATTTACGACTCTTCCGTATCCATAAACGTATTCATTATCCCCAAATTAAATCATGGTCATGCGAAAATTGTGGTAAGCGTTACAGTTCAAAAAATTTGCTTGACGAACATATGAATACACACACCGGTAATCGTCCGTACATTTGCGAAGTATGTGGCAAAgattttgcatcaaaatataCACATCGAGCTCATGTCAAAACTCATGAAGTTAGATCTAGACCTTTTAATTGTACGCAGTGTGAAAAATCTTTTCTGAGTCAACAAAATTTGACCCAACATCTCAAAACTCATAGTGGTGTAAAAGACTTTGTTTGTCAACAATGtggTAAAGCATTTGGCTCACAGCATAATCTAGAAGTACATAACATTGTACATACTGGATATAAACCTTATATTTGCAAAACATGTGGCAAAGCATTTGCTCGAAAAGCAGAAATACGAGATCACGAAAGAACTCACACAGGCGAAAAACCATACCAGTGCGAATTTTGTGGAGCTACATTCAGtcagAGATCAAATTTGCAATCACATAAGAGAGCAACacattataatgataaaagatACAAATGCGATGAATGTGGTAAAGGTTTTAAAAGACGAAGATTGTTGGACTACCATATTAAAGCTGCTCATACAGGAGAAAGGCCTTATAAGTGTGATACTTGTACAGCTACATTTGTTTACCCagaacattttaaaaaacatatgcGTATTCATACGGGAGAAAAACCATATTTGTGCGAgGTATGTGGAAAAGCTTTTAATAGCAGAGATAATCGTAATGCACATAGATTTATTCATAGTGATAAGAAACCTTATGAATGTTTGGTTTGTGGAGCTGGCTTTATGAGAAAACCATTGCTTTATACACATATGCAAACACaagGTCACCTAAATGATACTATTGTTGTTAATCAACCAAGACTAACTACAGAAGAAGATGTGATACTTGAAGATAGTGTGCATTTAGTAATGGAAGATGATGAGGACCAGttGGATGAAGATACCCAGTTAATTGTTGCAGATTTAAAATCTAATCAAGTAATCATCCAAGATGGGGGTCAACATAAGCTTATAAGTTTATCAGGAGAACACGTAACAAGCAGTGATATTAATCAACTTGTAATTGATGGACAGctgTCTTTTGAAAATTCGAACACTGTAAACTGTAAACAAGAAGTATCAGATGATGTTGAGGAAGTTTATGGCTACCAGGATGATGAAGGCAATACCATCGTTTTGCGTCCAGGCACGGATATTAAAGATCTACTTAGTGACGGAAGCAAAACAATGCAACTTGTCCAGATTCGCTTACCATCAAATGCTGATGCAGAAGGGAGGGATTGGTTGAATCTAGTACAAAGCACTTGA
Protein Sequence: MSMDLEKDSQNCLLCNNKAGISSRQSISIFGENAITSSEKTILSVLCSTLQTPLIKEKIHSSIMCKKCCKLVNEADELEIKLNKVKEEICNLFKKTSEKFCDSDKKDDVIDHDYVDNIDITNSVSVVKLEKLLDTKKKRKKVTIVEPPEKTNTKNASAAKIVESNKEAKVINEKENKADLENSMSDNDFPDNSNDYSDVEDPDTDLPNNDSTSEVPVDTKSSKKQKDKTDTPKELAIKQDDSYTCVKCNDGVKRDAKTIISHLKMEHEARLYICDVCGDMFSKRTDLSHHLDDHVATEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQIKSWSCENCGKRYSSKNLLDEHMNTHTGNRPYICEVCGKDFASKYTHRAHVKTHEVRSRPFNCTQCEKSFLSQQNLTQHLKTHSGVKDFVCQQCGKAFGSQHNLEVHNIVHTGYKPYICKTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCDTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGAGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEEDVILEDSVHLVMEDDEDQLDEDTQLIVADLKSNQVIIQDGGQHKLISLSGEHVTSSDINQLVIDGQLSFENSNTVNCKQEVSDDVEEVYGYQDDEGNTIVLRPGTDIKDLLSDGSKTMQLVQIRLPSNADAEGRDWLNLVQST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -