Basic Information

Insect: Leptomastidea abnormis
Gene Symbol: -
Assembly: GCA_030522805.1
Location: JAPYZE010000028.1:86245-88066[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.7e-05 0.0029 19.2 0.6 2 23 205 226 204 226 0.95

2 10 2.1e-05 0.0037 18.9 2.0 1 23 322 344 322 344 0.99

3 10 1.2e-05 0.0021 19.7 2.5 1 23 350 372 350 372 0.98

4 10 7.8e-07 0.00014 23.4 2.0 1 23 378 400 378 400 0.98

5 10 0.00093 0.17 13.7 5.3 1 23 410 432 410 432 0.98

6 10 1.2e-06 0.00021 22.8 3.9 1 23 438 460 438 460 0.98

7 10 4.2e-08 7.4e-06 27.4 1.4 1 23 466 488 466 488 0.98

8 10 8.7e-08 1.5e-05 26.4 2.7 1 23 494 516 494 516 0.98

9 10 4.6e-06 0.00081 21.0 3.5 1 23 522 544 522 544 0.96

10 10 1.2e-05 0.0022 19.6 3.2 1 23 550 572 550 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.7e-05	0.0029	19.2	0.6	2	23	205	226	204	226	0.95
2	10	2.1e-05	0.0037	18.9	2.0	1	23	322	344	322	344	0.99
3	10	1.2e-05	0.0021	19.7	2.5	1	23	350	372	350	372	0.98
4	10	7.8e-07	0.00014	23.4	2.0	1	23	378	400	378	400	0.98
5	10	0.00093	0.17	13.7	5.3	1	23	410	432	410	432	0.98
6	10	1.2e-06	0.00021	22.8	3.9	1	23	438	460	438	460	0.98
7	10	4.2e-08	7.4e-06	27.4	1.4	1	23	466	488	466	488	0.98
8	10	8.7e-08	1.5e-05	26.4	2.7	1	23	494	516	494	516	0.98
9	10	4.6e-06	0.00081	21.0	3.5	1	23	522	544	522	544	0.96
10	10	1.2e-05	0.0022	19.6	3.2	1	23	550	572	550	572	0.98

Sequence Information

Coding Sequence: atgtttattgtcACGAAGAAAATCGATAGTGAGAATATAAGTAGAGTTTGCCGGACTTGTTTACAAGAAGATAACGATAAAATGGTGTATTTATTTGTCGGCCCAGCAGACTCATCTTTAGCTGCCAAATTACAATCTCTTTCCTGTTTAAAGGTAACCCAAGGCGATGGGCTTCCAGAAAAAATGTGTGAAAGATGTGTGATTAGAGCAGAATCAGCTCTACTCTTTAGAGAACAATGTAGAGCTGCAGATAAAGCATTGAGACAAGCTGCAGTAACAACAGCTAATATCTCTAATATTCCTTCCTATCCAAGTATGTcttctaataaaatttacaatcagCACGATAGCCAAAGTTTACAGCCCTTGCAAAGTTCTCCCAAGTTCAGTAATTATGAACCTTTTCCAAATCATCGGGAACTTTACATGCACAATCAATTATATCCTACATTTTATCAtcaagaagaaaatataaaccaacattcttatattataaaacCCCATAATagctattttaatttgaattatccTGATTCTAATAATCAAATGTTTATTGATAAACCTATTGTTAGACCTAGTAATCATTTGGATTATAAAACAGCTTGTGCATTGCAATGTAGCATCTGTAACtatactttttcaaataaaacccAATTAGTAAACCACAGTATTATTCATAACGATGATCATACTGATCAAACATCTAATGATgaaataaatgttgaaattgAAGATAATTCAAATAcagctgaaaaaaattattatgacaaACCTACTAGTGATATGATTGAATCGTCTTTTGACCCTATAAATTGTGACAGATTGAAAAACTCaaccttttcaaatattattgataaaagtAATACCAAAAATGGAACTAGTGTAGATAATCCAGTCGGAATATATCAAGATGTACATGTACAGAATTATAAAGATTCTTTGGAAATtaacaagaataataaatatcagTGTGAACTTTGCAATaactcttttaataaaaaatcaaaacttgtgACTCATCAGCTAActcataataaacataaaacttTTGAATGTTGTCAATGTGAAAAATCTTATTCTTCAAAAAGTAAACTTGCTGCTCACTTACGTCTTCATACTCGAACAAATGTACATCAGTGTACCATTTgccaaaaaatatttgcttaccCATCATATTTAAAAGAACACATGAAATCACATTCTTCGAAACAAGTCAAGAAAGCTTCTTTTGAATGTACTCAATGCAGAAAACAATTTTATCTTTCCAAAAGCTACAAGAGGCATATGAGGTTTCATACAGGTAAAGATTTATATCATTGCGACATCTGTAACAAGTTATTTAgtcaaaaatatactttaaaagtaCACATGAGATCTcatgaagaaataaaattccACAAGTGTGATATATGTGATAAGgcatttaatcaaaaaagtaaTCTTGTTGAGCATGTTAGAACGCATACAAAAGTTAAGccttttaaatgtaaaatctgTGACAAAAGTTTTGTACAATCtagtcatttaaaaattcatgaacTTACGCACAATTCAATCAGACGTTTTCAGTGTAGAATGTGtggaaaaagatttaaattaccTAGTCATTTAAAGAGACATACAGACTTGCACACaggtttaaaaatgtataaatgtgaACAGTGCAATCAAATGTTTTCACAAGCTTTTAGTTTAAAACGCCATTCAAAAAAGCATGCTGAGTCAgttaatgaataa
Protein Sequence: MFIVTKKIDSENISRVCRTCLQEDNDKMVYLFVGPADSSLAAKLQSLSCLKVTQGDGLPEKMCERCVIRAESALLFREQCRAADKALRQAAVTTANISNIPSYPSMSSNKIYNQHDSQSLQPLQSSPKFSNYEPFPNHRELYMHNQLYPTFYHQEENINQHSYIIKPHNSYFNLNYPDSNNQMFIDKPIVRPSNHLDYKTACALQCSICNYTFSNKTQLVNHSIIHNDDHTDQTSNDEINVEIEDNSNTAEKNYYDKPTSDMIESSFDPINCDRLKNSTFSNIIDKSNTKNGTSVDNPVGIYQDVHVQNYKDSLEINKNNKYQCELCNNSFNKKSKLVTHQLTHNKHKTFECCQCEKSYSSKSKLAAHLRLHTRTNVHQCTICQKIFAYPSYLKEHMKSHSSKQVKKASFECTQCRKQFYLSKSYKRHMRFHTGKDLYHCDICNKLFSQKYTLKVHMRSHEEIKFHKCDICDKAFNQKSNLVEHVRTHTKVKPFKCKICDKSFVQSSHLKIHELTHNSIRRFQCRMCGKRFKLPSHLKRHTDLHTGLKMYKCEQCNQMFSQAFSLKRHSKKHAESVNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -