Labn008345.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010002604.1:5100-7400[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3e-05 0.0023 19.6 0.3 1 23 86 109 86 109 0.98 2 15 1.8e-05 0.0031 19.1 3.4 2 23 116 138 115 138 0.95 3 15 0.019 3.4 9.6 1.1 1 23 144 166 144 166 0.99 4 15 1.2e-05 0.0022 19.6 2.0 1 23 172 194 172 194 0.97 5 15 2.7e-06 0.00047 21.7 1.6 1 23 204 226 204 226 0.97 6 15 7.6e-05 0.013 17.1 1.2 3 23 234 254 232 254 0.98 7 15 0.0053 0.94 11.3 0.2 1 23 287 310 287 310 0.97 8 15 1.7e-05 0.003 19.2 5.0 1 23 324 346 324 346 0.99 9 15 1.9e-06 0.00033 22.2 2.7 1 23 370 392 370 392 0.99 10 15 0.00034 0.06 15.1 0.2 3 23 400 421 398 421 0.90 11 15 0.005 0.88 11.4 0.5 1 23 427 449 427 449 0.98 12 15 9.4e-05 0.017 16.9 0.5 1 23 455 477 455 477 0.98 13 15 4.1e-05 0.0073 18.0 1.9 1 23 483 505 483 505 0.97 14 15 4.3e-05 0.0076 17.9 0.1 1 23 511 533 511 533 0.97 15 15 0.0012 0.22 13.3 4.1 1 23 539 561 539 562 0.95
Sequence Information
- Coding Sequence
- ATGACTATAAGAGCCTCTGATCTGGAAGACCTAAGAGTGGTCAAAACCGAGGAAGCAACTGAAGAAGCACAACTACTCCTAAAAAGACGATCCAGCAACGATGACAATGACAACTGCGAGCTTGAGGAGGCTTtcgaagaggaagaagaagaaaagagctGTATTACTGCTCCAGCCAAATTTGATAGCAAGGCTCAAGAAAAACGACGTGCCGAGACGGTACGAGCTCGCGTTGTCATCAACGGAGCGACGTTATACCAGTGCCCGGAGTGTCCTCGACTTCTCAGCACCGCATACAATTTTCAAGCTCACCGTCGTCGCGTCCACGGTGGTGAACGACCCTGTCGATGTAACCGCTGCGACAAGCGCTTCAGCACAGGCTCCTCGTTACGTCGTCACGTTCGCGAGGTCCACGACAAGATCAAGGAGTACAAGTGCGAGTTCTGCGAACGTCGACTTGCCTCCAGGGTATCGCGAGACGAGCACCAGCGGACCCACACCGATGAACGACCTCACGAGTGCGGAGTTTGCGGCAAACGTTTTCGTCAACGTGCTTCGTTATCGGTACATAAACGATTTCATGCCTCGGAAACCAGCACCTCGTTcgtttttaattgcaaaatttgcgGCAGGGAATTCCGACGTAAACAAGATATGCAACGACATGAGCTCACCCATACCGATCTTATGCCTTACGGTTGCGATAAATGCAACAAACGATTTCGCAGCTCCGCATCGGCGATACGACATCGACAGACACATGCATCAGCTGATGGATCGGCTAAACTTATAGTCAATACCAATAAGAAAGATGCAGAGAAGGAAGACACAGATAGCATCAAGACGAAGGATTTTGCTTACATGTGTGGTATCTGCGAGAAGTTATACACAGAAGAACTCGAGCTGCTTCGTCATCTGAAAAAGGATCACGATCTGTCGACATCCCAACGTTCCGGCAACGTACTGAGTTACCAGTGCAACGCCTGTGGCAAATCTTTCAAGAAAAAATGCAGCCTGGTCACACACAAACGCACCCACGAACGTCAATTGAGTGGCGAGGCCGCTCTGATCGAGCAAGGCAAATTCTTCGTCGATGGAGTTTGCCACTATCGTTGCCCTGACTGCAAACGCATCTTCAATACGAAACACAGCTGGACCCGTCATTGGCGTGTTCACGCCAACGAGCGACCGATCATTTGCCACATTTGCGCCAAGAGCTTTCGAATCCTCGGCGACCTCAAACGCCATATAGACGACGtccacaataaaataaaacgctATTCCTGTGATATTTGTGGTAATTGCTTTGCGGCAAAAGCTACACGAGATGCCCATCGACGTATCCATACAGGCGAAAAGCCCTTCACTTGTGACACTTGCGGCAAAAACTTCCGGTCTATCAACCTGTTAGGCATTCACAAACGCATTCACAAAGATTATCGGCCTCATCAGTGTTCCTTCTGCGAAAAAGCCTTTCGAGACAAACAAAAACTTACAGCTCATACCGCCATACACACGGGTATACGACCCTATGCTTGTGACGTGTGTGGCAAAATGTTTGCTGCTAAAGGCGAGATGAATCGACACAGATCCGTTCACTTTAATGATAGACCTCATGTATGCTCGGTTTGTAATATGGGTTTTAGACTAAATAGGTATCTTAGAAATCATATCAAACAACATCACAAGGATGTGGCTGAAGAATTGATTAAGGGTCTCGGAAAGGATTAA
- Protein Sequence
- MTIRASDLEDLRVVKTEEATEEAQLLLKRRSSNDDNDNCELEEAFEEEEEEKSCITAPAKFDSKAQEKRRAETVRARVVINGATLYQCPECPRLLSTAYNFQAHRRRVHGGERPCRCNRCDKRFSTGSSLRRHVREVHDKIKEYKCEFCERRLASRVSRDEHQRTHTDERPHECGVCGKRFRQRASLSVHKRFHASETSTSFVFNCKICGREFRRKQDMQRHELTHTDLMPYGCDKCNKRFRSSASAIRHRQTHASADGSAKLIVNTNKKDAEKEDTDSIKTKDFAYMCGICEKLYTEELELLRHLKKDHDLSTSQRSGNVLSYQCNACGKSFKKKCSLVTHKRTHERQLSGEAALIEQGKFFVDGVCHYRCPDCKRIFNTKHSWTRHWRVHANERPIICHICAKSFRILGDLKRHIDDVHNKIKRYSCDICGNCFAAKATRDAHRRIHTGEKPFTCDTCGKNFRSINLLGIHKRIHKDYRPHQCSFCEKAFRDKQKLTAHTAIHTGIRPYACDVCGKMFAAKGEMNRHRSVHFNDRPHVCSVCNMGFRLNRYLRNHIKQHHKDVAEELIKGLGKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -