Labn009566.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- lola
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010003354.1:6857-11830[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1 1.8e+04 -3.2 0.0 3 18 101 116 101 119 0.75 2 2 2.1e-08 4.8e-05 24.3 0.0 3 38 399 434 397 439 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGCCTGAGGTGGAACAACCATCAATCCACCCTCATACAAAATTTTGACACATTACTGGAATCTGGCACATTAGTAGACTGCACGTTGGCGGCGGAGGGGAAGTACCTAAAGGCCCACAAAGTTGTCCTCTCCGCGTGTTCACCTTACTTTGAGGGCCTGTTGAGTGAACACTACGACAAACATCCAGTCTTCATACTCAAAGATGTAAAATTCAAAGAACTGAAGGCGATGATGGAGTACATGTACAGGGGGGAGGTGAATATCTCCCAGGAACAGTTAACGGCGCTGTTGAAGGCCGCTGAGTCCTTACAAATTAAAGGTCTGTCGGATAATCGAACGGGTGGTAGCACAAGCAGTACCACAAGCGGCACGACGACCAGCAAGGCTGAGACGAGGCCAGCGAAAACAAGCTCGGCGGTGACGAGCACAGCGGTTCCATCCGCTGCCTCGTCGGCAGTCGAAATTCCACACGCGTCTTCCGGTCTCACAATCGAAAAGAACAAAGTTCCTAGGCAAAGTCTCCAGCAGGTCTCCGTTAGTGATCTGCCTGATGGTGGTTCTGCCAGTCCGCAGCTCAGAGGTCTCTCCTCAAgGGAAGGATCGCAAAGTCCAACGCGAAGAAGAAGGCGAGCGAGAAGAAGAAGTCTTGGCAACGAAGAAACAAATGTCTCTTCAATCGAAAACCATGAAGCATCAAACTCGAGCGACTTTACCATCAGCGCGCCAGCGCTCGGAGTCGCGCCAGTTGCTGATGAAAAGTCACATGCCGATCAAGCGGATCCGATTGGCAGGTCAGCACTGATGCAGCAACTGACTAAACCAGCCGACGACATGATTCAGTTGCCAATTGAAAAACCTGAGCCTACCGAAGAGATGATCCAACCAAAGTCTGAGTACCTGGATGACCAAGAAAGTGTTGAAGATCTGACAAACTTGGATGACGATATGAATGACGCAAACGAAATGGAGCAAGACAACAGTAGGGCAGGCCCGAGTCATGATCCTTCCCAACACTCTGGTGGGTTAGTGATGGGTGTCAGTTCAAAGATCGTTATTCCTTCGTGCACTCGTGGTCCGACCGATGTCGGGCACTTGCCTCGCAATGGCTTAAAGGTAGACGTGAGTAGATTGATGCGCTCGCTCAAACCCAAGCCAAACAGGAAGTATAGCTCAGATGCAATTAAGTTGTCCCTGGAAGCTATACTGCATTTAGGAATTAGTACGAGGCAGGTTTCCGAGATTTACGGTGTCAATCGTTCTACTCTTCAATCTTATCTCAAAAAATTGAACATCGTACGAAGAAGTCTCGCGTCGTGGCACATGGCAGGAGACAGAAGCAACACAAGCGTCGCCGCATCCGGACCACCTGGTAGCCAAGATGAAGTATTCCTCGCAGCGCAAGAAGCCGCCCAAGGCCAGCGTGATTCGCAAGGTAGGCTCATCCACGCCACTTTTCATTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMEYMYRGEVNISQEQLTALLKAAESLQIKGLSDNRTGGSTSSTTSGTTTSKAETRPAKTSSAVTSTAVPSAASSAVEIPHASSGLTIEKNKVPRQSLQQVSVSDLPDGGSASPQLRGLSSREGSQSPTRRRRRARRRSLGNEETNVSSIENHEASNSSDFTISAPALGVAPVADEKSHADQADPIGRSALMQQLTKPADDMIQLPIEKPEPTEEMIQPKSEYLDDQESVEDLTNLDDDMNDANEMEQDNSRAGPSHDPSQHSGGLVMGVSSKIVIPSCTRGPTDVGHLPRNGLKVDVSRLMRSLKPKPNRKYSSDAIKLSLEAILHLGISTRQVSEIYGVNRSTLQSYLKKLNIVRRSLASWHMAGDRSNTSVAASGPPGSQDEVFLAAQEAAQGQRDSQGRLIHATFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878052;
- 90% Identity
- iTF_00878052;
- 80% Identity
- iTF_00878052;