Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.7e-10 6.1e-07 30.3 0.0 6 39 16 49 11 55 0.86

2 2 2.3 5.2e+03 -1.4 0.1 13 23 127 137 123 138 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.7e-10	6.1e-07	30.3	0.0	6	39	16	49	11	55	0.86
2	2	2.3	5.2e+03	-1.4	0.1	13	23	127	137	123	138	0.80

Coding Sequence: ATGAATAAACCTAAGAAACGAATGGTTTATACAAAAGAAGATGCTGAACGTGCTGTTAGAGATGTAAAGTCAGGAATGTCTATTAATGCTGCCAGTGTGAAATATAATATTCCACGTTCTACTGTACACAGTAAAGTTAATAACTTATATGAAGATAAAAAACCTGGTCCAAAGACTATTCTTTCTGAATCAGAGGAAATAGAGTTGATTGAATGGATTTTCTACTGCAGTAAAAATGGACATCCAATAACTAAACTGCAGCTGTTAAATAGTGTGAACATAATTACAAAGGAAAGAATAACACCATTTAGTGAAAATGGACCAGGTCGAAGCTGGTATTATGGTTTTATGAAGCGACACCCAGAATTAGCTATGCGTATGTCTGAAAATGTTAGCCAGACAAGAGCAGCAGTCAGTGAAACTGCTTTGAGAGGATGGTTTAGTACAGTAAAGCAGTAtttagcagaaaaaaatttattaggtaTAGATAAATCCAGAATATTCAACACAGATGAAACTCCTATACCTTTAAATAGCAAAGCTGGAAAAGTCATAACACAAAAAGGAACTAAAGATGTATATTCTATATCAGGAAACAacgataaagaaaatattacagTACTGGTAACTGGTAATGCTGCTGGCCAGTTAGCACCTCCATTGGTGTTATTTTCTTACAAGCGTATACCTGcagatatgtataaaaaaatgccAAGTGGATGGAGTTACGGTACATCTGATTCTGGCTATATgctaagtgaaaatttttttgaatacatAGCTAATGTCTTTCATCCATGGCTAATTAAAACTAATATAGCTCTGCCTGTCATAATGTACGTGGATGGACATGCTTCTCATCTTACTTAA
Protein Sequence: MNKPKKRMVYTKEDAERAVRDVKSGMSINAASVKYNIPRSTVHSKVNNLYEDKKPGPKTILSESEEIELIEWIFYCSKNGHPITKLQLLNSVNIITKERITPFSENGPGRSWYYGFMKRHPELAMRMSENVSQTRAAVSETALRGWFSTVKQYLAEKNLLGIDKSRIFNTDETPIPLNSKAGKVITQKGTKDVYSISGNNDKENITVLVTGNAAGQLAPPLVLFSYKRIPADMYKKMPSGWSYGTSDSGYMLSENFFEYIANVFHPWLIKTNIALPVIMYVDGHASHLT

Sequence clustering based on sequence similarity using MMseqs2