Labn029321.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010034515.1:1269-1986[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-11 3.6e-08 34.3 0.0 1 37 11 47 11 51 0.92 2 2 1.4 3.2e+03 -0.8 0.2 13 23 127 137 123 139 0.80
Sequence Information
- Coding Sequence
- ATGAATAAACCTAAGAAACGAATGGCGTATACAAAAGAAGATATTGAACGTGCTGTTAAAGATGTTAAGTCAGGAATGTCTATTAATGCTGCCAGTGTGAAATATAATATTCCACGTTCTACTGTACatagtaaagttaataatttttataaagataaaaaaccTGGTCCAAACACTATTCTTTCTGAATCAGAGGAAACAGAGTTAATAGAGTGGATTTTCCATTGCAGTAAAAATGGACACCCAGTAACTAAACTGCAGCTATTAAATAGTTTGAACATAATTACAAAGGAAAGAATAACATCATTTAGTGAAAATGGACCAGGTCGAAGCTGGTATTCTGGTTTTATGAAGCGACACCCAGAATTAGCTATGCGAATGTCTGAAAATGTTAGCCAGACAAGAGCAGCAGTCAGTGAAACTGCTTTGAGAGGATGGTTTAGTACAATGAAACTACCTTTAAATAGTAAAGCTGGAAAAGTCCTAACACAAAAAGGAACTAGAGATGTATATTCTATATCAGGAAACAACGATAGAGAAAATATTACAGTACTAGTAACTGGTAATGCTGCTGGCCAGTTAGCACCTCCATTGGTGTTATTTTCTTATAAGCGTATACCTGcagaaatgtataaaaaaatgccAAGTGGATGA
- Protein Sequence
- MNKPKKRMAYTKEDIERAVKDVKSGMSINAASVKYNIPRSTVHSKVNNFYKDKKPGPNTILSESEETELIEWIFHCSKNGHPVTKLQLLNSLNIITKERITSFSENGPGRSWYSGFMKRHPELAMRMSENVSQTRAAVSETALRGWFSTMKLPLNSKAGKVLTQKGTRDVYSISGNNDRENITVLVTGNAAGQLAPPLVLFSYKRIPAEMYKKMPSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -