Labn006992.1
Basic Information
- Insect
- Leptomastidea abnormis
- Gene Symbol
- -
- Assembly
- GCA_030522805.1
- Location
- JAPYZE010001895.1:12571-14203[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.4e-12 1e-08 36.1 0.0 4 37 31 64 31 69 0.92 2 3 5.8e-12 1.3e-08 35.7 0.0 3 38 386 421 384 425 0.93 3 3 0.92 2.1e+03 -0.2 0.0 21 31 475 485 473 485 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGTGAGAAtatcaaacgtaaaaaaaagtcattgcAAGAAGAATTACTAACACGACCTCCAGGAAGACAAAAATGGAACAAACTTGACATGGAGAAAGCTGTTGAAGATGTATACAACAAGAAAATGGGAGTGCTAAAGGCATCAAAACTTTACAACGTACCAAAAACAACGCTTTTAAAATACGTCCATCAAACAGCTGATTTTCCTACTGCTACTTTTTTTCCTGAAAAACTTGGTCGCAAGACTCTATTGCCATCAGAAGTTGAAGAAGAACTTGTTGAGATTATACATCTTATGGAAAAGAATAACTGTACACTTAAACCTGTTGAAATAAAATCTCTGGCCTACAAATTAGCTATTAAACATTCCATACTAGATGTATTTCACAATGAAAGAGCTGGGAAAACTtggttttattcatttataagaAGACACAATATTGttttacaaagaaataaaattagtaataatgtggatgtaaagaataaaaaggcGGAAATACTGAAAGAATGGTTTGAATGTGATCAAATAGTGCAAGAAAATATCAAAGAACAAGAAGATTTAGAGGAAGATCAAGAATTGcaagaaaagaataaagaaaaagaattaaatgaaGATTTAGACATGCAAGAACAGGTAAAAGATTTAGAAGAAAATCAAGAAGAGATAAAAGAGCAAGATAATTTGGAAAAAGATCAAGAGGTGCAAAAAGAGACAAGTGAACAagaaaatttagaagaaaatctTAAGATGCAAGAGGAAATTAATGAGGTAAAAGATTTAGAAGAATGTGAAAAGGTAcaagaaaatatagaagaacAAGATTTGGAAAAAAATCAAGAGGTGCACAAAGAGACAAGAGATCCAAAAAATTTAGAGGGAGGTCTGGAGGTGCAAAAAGAGACGAGAGAGCAAGAAAATTCAGAGATAGATCTAGAGTGGCAAATCAagacagaagaagaagatttaGAGGAAGATCAAGAGAtgcaaaaaaagacaaaaaaatgtaaggaaaattataataaacctGTGAAATTTGAGGAAATATTATTGAAAGAAGAATGGTTGGACTTTGATtacaaaacacaaaaaaagtCATCACAAAAAAAACCACCAACACGACCCCCAGAAAGAAATCAATGGAGTACAGATGACATGGCAAAGGCTATTGAAATTGTACGCAAAAAGAAAATGGGATATAAAAAGGCATCAATTCTTTACAATGTACCAAAATCATCACTTCGAAGATTTGCACAAAAAATGGCTGAATCTCCTACTATTACTGTTGTTCAATCAAAACTTGGTCGCAAGACAGTCTTTTCCCCTGATCTTGAAAAAAAGCTTGTTAAAATGATagaagcaaagaaaaagaaaaatcatgcACTAACACGTGCTGATGTATTATCTCTAGCTATTAAATTAGCTACAAAACATTCTATACCCAATTCGTTTCATACTAAAAGTGGTGGAAAAGGGAAAAAATGTTTGAAGGTAATCAAGAGATATCAACAAGTACTAGAGAGACAGTAG
- Protein Sequence
- MPRENIKRKKKSLQEELLTRPPGRQKWNKLDMEKAVEDVYNKKMGVLKASKLYNVPKTTLLKYVHQTADFPTATFFPEKLGRKTLLPSEVEEELVEIIHLMEKNNCTLKPVEIKSLAYKLAIKHSILDVFHNERAGKTWFYSFIRRHNIVLQRNKISNNVDVKNKKAEILKEWFECDQIVQENIKEQEDLEEDQELQEKNKEKELNEDLDMQEQVKDLEENQEEIKEQDNLEKDQEVQKETSEQENLEENLKMQEEINEVKDLEECEKVQENIEEQDLEKNQEVHKETRDPKNLEGGLEVQKETREQENSEIDLEWQIKTEEEDLEEDQEMQKKTKKCKENYNKPVKFEEILLKEEWLDFDYKTQKKSSQKKPPTRPPERNQWSTDDMAKAIEIVRKKKMGYKKASILYNVPKSSLRRFAQKMAESPTITVVQSKLGRKTVFSPDLEKKLVKMIEAKKKKNHALTRADVLSLAIKLATKHSIPNSFHTKSGGKGKKCLKVIKRYQQVLERQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -